PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547252.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 357aa    MW: 40001 Da    PI: 6.9917
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.6e-06426326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    + lC+ff + G C  Gd+C ++H+
  XP_010547252.1  4 RILCKFFIQ-GACLKGDNCEYSHD 26
                    669**9999.*************6 PP
2zf-CCCH27.36.4e-093253325
                    S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                    + +C+f+++ G+C+yG+rC++ H
  XP_010547252.1 32 RNICSFYQK-GICSYGSRCRYEH 53
                    568******.***********88 PP
3zf-CCCH22.42.1e-07139161326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G+C++GdrC+ +Hg
  XP_010547252.1 139 RPICS-FAAAGECQRGDRCPHIHG 161
                     899**.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.197128IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-8426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4626IPR000571Zinc finger, CCCH-type
PfamPF156632.2E-8768No hitNo description
PROSITE profilePS5010314.0422956IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526136163IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4137162IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4139161IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.93E-13193269No hitNo description
Gene3DG3DSA:3.30.40.102.0E-10198265IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.96E-4204264No hitNo description
PROSITE profilePS5008912.489205263IPR001841Zinc finger, RING-type
PfamPF000979.9E-8205262IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001843.6E-7205262IPR001841Zinc finger, RING-type
PROSITE patternPS005180229238IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.77292321IPR000571Zinc finger, CCCH-type
SMARTSM003561292320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSDRILCKFF IQGACLKGDN CEYSHDSNAS ARNICSFYQK GICSYGSRCR YEHVNASQSL  60
SSSSSAWNVP RQPFSSDSEP VAPASQVGDV ATLPGTASSE YSSLFTPSEP AWNLQNNVDY  120
GWDNEGAMVL SVDVQPRDRP ICSFAAAGEC QRGDRCPHIH GDLCPTCGKN CLHPFRPEER  180
EEHTKECEKM QKHVEALKRS QDIECSVCLD RILSKPSPAE RKFGLMTECD HPFCIQCIRN  240
WRSSSPVSGM DVNNTLRACP ICRKRSYFVV PSVVWYSTPE EKKEIVSTYK AKLRSINCRH  300
FNFGNGSCPF GTSCFYKHAY PDGRLEEVVL RHLGSQDGEI TIADNIRLSD FLGDLRI
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547252.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
RefseqXP_010547253.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
RefseqXP_019058821.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS61e-172C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLV4LZC71e-175V4LZC7_EUTSA; Uncharacterized protein
STRINGXP_010547252.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-163C3H family protein