PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547220.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 512aa    MW: 57163.7 Da    PI: 5.801
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.95.1e-1391415121374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+avs++dl +aq+++ +l+ ++s +g+p+qRl ay++e+L arl++s+s++yk+l+  +++   s++ l+++++++ev+P++kf++
  XP_010547220.1 141 LRTVLVSCAKAVSDNDLLMAQWMIDELRLMVSVSGEPIQRLGAYLLEGLVARLSSSGSSIYKSLNRCPEP--ASTDLLSYMHILYEVCPYFKFGY 233
                     5789************************************************************666665..499******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea+++e+rvHi+Df+i+qG QW++L+qa+a+Rp+gpp++RiTg+++ +s   +  +l+ +g+rLak+A +++vpfefn+ v+ + ++
  XP_010547220.1 234 MSANGAIAEAMKEENRVHIVDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDITSAyaRGGSLSIVGNRLAKLAGQFKVPFEFNA-VSVSGSE 327
                     ******************************************************999899999************************.7999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L ++pgEalaVn+++ lh+++desvs+e++rd++L++vk+lsPkvv++veqe+++n++ F+ rf+e+++yy+a+f+s++++lpr++++ri
  XP_010547220.1 328 VKPENLGIRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKGLSPKVVTLVEQESNTNTAAFFPRFIETMNYYTAMFESIDVTLPRDHKQRI 422
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r++vn+vaceg+er+erhe l+kWr+r+e+aGF p+pls+ ++++++ ll+++++  yr+ee++g l+lgWk+r Lv+ +aW+
  XP_010547220.1 423 NVEQHCLARDVVNIVACEGTERVERHELLGKWRSRFEMAGFDPYPLSSLVNSTIEGLLKNYSD-KYRLEEREGVLYLGWKNRDLVVSCAWK 512
                     **************************************************************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.117115493IPR005202Transcription factor GRAS
PfamPF035141.8E-136141512IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MLLDNGPDMS DMSAFQTFDN QFNFSSTAKL RHLPVQNPHK RYCTLESSTS SLAGINPSVY  60
DPFSSKSLQN NSPDHGSSSL SGSCVTDDVN DLRHKLKELE TAMLGPDSEV FDCLDSTEST  120
TACQDIDSWR TTFQAISRRD LRTVLVSCAK AVSDNDLLMA QWMIDELRLM VSVSGEPIQR  180
LGAYLLEGLV ARLSSSGSSI YKSLNRCPEP ASTDLLSYMH ILYEVCPYFK FGYMSANGAI  240
AEAMKEENRV HIVDFQIGQG SQWVTLIQAF AARPGGPPRI RITGIDDITS AYARGGSLSI  300
VGNRLAKLAG QFKVPFEFNA VSVSGSEVKP ENLGIRPGEA LAVNFAFVLH HMPDESVSTE  360
NHRDRLLRMV KGLSPKVVTL VEQESNTNTA AFFPRFIETM NYYTAMFESI DVTLPRDHKQ  420
RINVEQHCLA RDVVNIVACE GTERVERHEL LGKWRSRFEM AGFDPYPLSS LVNSTIEGLL  480
KNYSDKYRLE EREGVLYLGW KNRDLVVSCA WK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-651455128375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547219.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_010547220.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLR0G9L10.0R0G9L1_9BRAS; Uncharacterized protein
STRINGXP_010547219.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]