PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 700aa MW: 80684.9 Da PI: 6.5942

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010547203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.4	1.2e-23	79	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke +w+v+++++ HnHel XP_010547203.1 79 EYYITFARKNGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVIQWYVSQFSNVHNHELL 170 59******************8888.***************************************98744558***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-21	79	170	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.0E-22	302	395	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.767	574	609	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-6	582	609	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-5	584	611	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MSSSLEMALK PLSNIWIRRQ QCPCGDWKCY IRFDGDDQTS GASCQVTKRE TEQASSSSYD 60 TVFTPYVGQI FRTDDEAFEY YITFARKNGF SIRKARSTES QNLGVYRRDF VCYRSGFNQP 120 RKKANVEHPR ERKSVRCGCD AKLYLTKEIV DGVIQWYVSQ FSNVHNHELL EDDQVRLLPA 180 YRKIQQADQE RILLLSKAGF PVNRIVKLLE LEKGVQPGQL PFIEKDVRNF VRTCKKTVQE 240 NDAFLAEKRE NDILELLESC KAMAERDMDF SYDYTTDESH KVENLAWSYG ESVRAYSLFG 300 DVVIFDTTYR SITYGLLLGV LFGIDNHGKA ILLGCVLLQD ESCRAFTWAL QTFVRFMRGR 360 HPQTILTDID TALIDAIARE LPNTNHVIFM WHIVSKLSSW FCQALGSQYE DFRAGFEILC 420 RTGNANEFEQ QWNLFATRFG LASDKHVALL YSLRASWLPC YIRGHFVARA MTAEYKLSLD 480 SFSKRIVAGQ TSLQVFLEQV GAAASMAYQN PEQFHNLNVK TCMPMEEHAK SVLTPYAFSV 540 LQNEMVLSMQ YAVSEMPNGS YIVPHFKKME GECLVLWIPE NEEVHCSCKE FEHSGILCRH 600 SLRVLFMKNF FQIPDQYFLL RWRRESSLVP TESQNGQGTS DLCAREFHLL TETLLTESLI 660 SKERFDYVRK ELSTILDHVR NMPPVDTFVS VMASNTASEY

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MSSSLEMALK PLSNIWIRRQ QCPCGDWKCY IRFDGDDQTS GASCQVTKRE TEQASSSSYD  60
TVFTPYVGQI FRTDDEAFEY YITFARKNGF SIRKARSTES QNLGVYRRDF VCYRSGFNQP  120
RKKANVEHPR ERKSVRCGCD AKLYLTKEIV DGVIQWYVSQ FSNVHNHELL EDDQVRLLPA  180
YRKIQQADQE RILLLSKAGF PVNRIVKLLE LEKGVQPGQL PFIEKDVRNF VRTCKKTVQE  240
NDAFLAEKRE NDILELLESC KAMAERDMDF SYDYTTDESH KVENLAWSYG ESVRAYSLFG  300
DVVIFDTTYR SITYGLLLGV LFGIDNHGKA ILLGCVLLQD ESCRAFTWAL QTFVRFMRGR  360
HPQTILTDID TALIDAIARE LPNTNHVIFM WHIVSKLSSW FCQALGSQYE DFRAGFEILC  420
RTGNANEFEQ QWNLFATRFG LASDKHVALL YSLRASWLPC YIRGHFVARA MTAEYKLSLD  480
SFSKRIVAGQ TSLQVFLEQV GAAASMAYQN PEQFHNLNVK TCMPMEEHAK SVLTPYAFSV  540
LQNEMVLSMQ YAVSEMPNGS YIVPHFKKME GECLVLWIPE NEEVHCSCKE FEHSGILCRH  600
SLRVLFMKNF FQIPDQYFLL RWRRESSLVP TESQNGQGTS DLCAREFHLL TETLLTESLI  660
SKERFDYVRK ELSTILDHVR NMPPVDTFVS VMASNTASEY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010547203.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019058795.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A1J3IHD0	0.0	A0A1J3IHD0_NOCCA; Uncharacterized protein
STRING	XP_010547203.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]