PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547064.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 443aa    MW: 47820 Da    PI: 6.6435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.5e-053283661154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++++ +  L++l+ +      +K + a++L++A+eY+k L
  XP_010547064.1 328 VRKENLRDQITALQQLVSPF-----GKTDTASVLQEAIEYVKFL 366
                     578899***********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.579317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-10327380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-8327373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-6327371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAEEFPVTGI CGGAWWNSPK TVMSPAEICL SPCSMGFGPG LITPNGFGLS PDMKSNLSCT  60
ENNSACGNNS IAFGHKLQRE PDSDSGGSTV TIDSTLQMMG LGFPTSSSSD WNQNILQGDL  120
NSSLMGRTSQ DYCQGFLSVT SPYAYNPSSS SSSSSSSSSS SSSSSSSSSS SPSSSLLQSF  180
YENGLNPSLL NNNRTMNNTL LMSMTSCSED PHISWSKTEP FLEPMSSAMI PSSKQQTDYG  240
FNMSNTNTPP FWRSSNPNLD NIRTNSFVTS PQISTRFGDK PLSCHNNIAP KINLQRSSCG  300
QAAKKASDEH AAKKPRITTP SPLPTFKVRK ENLRDQITAL QQLVSPFGKT DTASVLQEAI  360
EYVKFLHDQV SVLCTPYLKQ GTSAQQQQQQ QQFSDKLKDP QGNGTQDLKS RGLCLVPISS  420
TFPVANETTA DFWTPTFGGN NFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547064.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547064.10.0PREDICTED: transcription factor bHLH112 isoform X1
SwissprotQ94JL31e-127BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A1J3CDX31e-129A0A1J3CDX3_NOCCA; Uncharacterized protein
STRINGXP_010547064.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-125bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]