PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 764aa MW: 87945.3 Da PI: 8.3921

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010546894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.9	2.2e-20	44	118	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GF+vr+ + ++s+++g++ +r+fvCsk g++ + +rtgC a ++v+++++gkw+++++++eHnHel XP_010546894.1 44 EFYNSYATSTGFKVRTGQLYRSRTDGTVSSRRFVCSKGGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 118 6*************************************876..............589*************************98 PP
2	FAR1	68.4	1.8e-21	204	280	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCskeg+++++ r+gC a +++k++++g w v++l+++HnHel p XP_010546894.1 204 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 280 6*************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-16	44	118	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.1E-17	204	280	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.3E-28	376	468	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.373	650	686	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-8	657	683	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-8	661	688	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
MVVKAYPLGM VRIMNNNGVG EDEGDSEVEP YVGLEFDSAE EAREFYNSYA TSTGFKVRTG 60 QLYRSRTDGT VSSRRFVCSK GGFQLNSRTG CPAFIRVQRR DTGKWVLDQI QKEHNHELGG 120 QVEETPRPPA VSQRRPAATK LAISVPHRPK MKVIDESDKA QSCPSGAISF KRFKGAEDSN 180 GQIQPKATEP YAGLEFGSAN EGCQFYQAYA EVVGFRVRIG QLFRSKVDGS ITSRRFVCSK 240 EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHELEP GKKNAGMKKI TEDATGGLDS 300 VDLIELNDFN NHIKKTRENT IGKEWYPMLL DYFQTRQAED MGFFYAVELD SNGSCMSIFW 360 ADSRARFACS QFGDAVVFDT SYRKGNYSIP FATFIGFNHH RQPVLLGCAL ISDESKEAFT 420 WLFQTWLRAM SGRRPRSIVA DQDSAILQAV AQVFPGTHHR YSAWQIRAKE RENLRSFPNE 480 FKYEYEKCIY QTQTTVEFDT LWNVLVNKYG LRDNVWLREM YEKRENWVPA YLRATFFGGI 540 PINGSIEPFF GTSLNSQTPI REFVSRYEQG LEQRREEERK EDFNSYNLQP FLQTKEIVEE 600 QCRRLYTLTI FRIFQNELVQ SYNYLGLKTY EEGAISRFLV RKCGNENEKH AVTFSASNLN 660 ASCSCQMFEY EGLLCRHILK VFNLLDIREL PSRYILHRWT KNAEFGFVRD VESGVSSQDL 720 KALMVWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL CWQR

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

MVVKAYPLGM VRIMNNNGVG EDEGDSEVEP YVGLEFDSAE EAREFYNSYA TSTGFKVRTG  60
QLYRSRTDGT VSSRRFVCSK GGFQLNSRTG CPAFIRVQRR DTGKWVLDQI QKEHNHELGG  120
QVEETPRPPA VSQRRPAATK LAISVPHRPK MKVIDESDKA QSCPSGAISF KRFKGAEDSN  180
GQIQPKATEP YAGLEFGSAN EGCQFYQAYA EVVGFRVRIG QLFRSKVDGS ITSRRFVCSK  240
EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHELEP GKKNAGMKKI TEDATGGLDS  300
VDLIELNDFN NHIKKTRENT IGKEWYPMLL DYFQTRQAED MGFFYAVELD SNGSCMSIFW  360
ADSRARFACS QFGDAVVFDT SYRKGNYSIP FATFIGFNHH RQPVLLGCAL ISDESKEAFT  420
WLFQTWLRAM SGRRPRSIVA DQDSAILQAV AQVFPGTHHR YSAWQIRAKE RENLRSFPNE  480
FKYEYEKCIY QTQTTVEFDT LWNVLVNKYG LRDNVWLREM YEKRENWVPA YLRATFFGGI  540
PINGSIEPFF GTSLNSQTPI REFVSRYEQG LEQRREEERK EDFNSYNLQP FLQTKEIVEE  600
QCRRLYTLTI FRIFQNELVQ SYNYLGLKTY EEGAISRFLV RKCGNENEKH AVTFSASNLN  660
ASCSCQMFEY EGLLCRHILK VFNLLDIREL PSRYILHRWT KNAEFGFVRD VESGVSSQDL  720
KALMVWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL CWQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010546894.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010546892.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	V4LFZ7	0.0	V4LFZ7_EUTSA; Uncharacterized protein
STRING	XP_010546892.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]