PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546692.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 369aa    MW: 42440.4 Da    PI: 7.3272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546692.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00113456123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C++Cg s s k++ ++Hi +H
  XP_010546692.1 34 YICQYCGISRSKKHLITSHILSH 56
                    89*******************96 PP
2zf-C2H218.26.8e-0682103223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ Cg sF+ + +Lk+H ++H
  XP_010546692.1  82 TCQECGASFKKPAHLKQHTQSH 103
                     6******************998 PP
3zf-C2H220.21.6e-06109133123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+  dC+ s++rk++L+rH+ tH
  XP_010546692.1 109 FRCTvdDCTASYKRKDHLNRHLLTH 133
                     89*********************99 PP
4zf-C2H2187.7e-06138163123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kCp  +C++ Fs + n+krH++  H
  XP_010546692.1 138 FKCPmdNCNREFSVQGNMKRHLKEfH 163
                     89*********************988 PP
5zf-C2H2187.7e-06185209123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C    Cgk+F  +s L++H+ +H
  XP_010546692.1 185 HVCDesGCGKVFMYPSKLQKHQDSH 209
                     789999****************998 PP
6zf-C2H221.27.5e-07276300223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     +C    C+++Fs+ snL++H++  H
  XP_010546692.1 276 QCDfdGCSMTFSNASNLRKHMKAvH 300
                     688999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355153456IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.27981108IPR007087Zinc finger, C2H2
SMARTSM003550.0481103IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-682107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-993135No hitNo description
Gene3DG3DSA:3.30.160.601.4E-9108135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.076109138IPR007087Zinc finger, C2H2
SMARTSM003550.0023109133IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-6136160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.56E-7136164No hitNo description
PROSITE profilePS5015710.596138168IPR007087Zinc finger, C2H2
SMARTSM003550.0026138163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-8179209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.62E-6181211No hitNo description
PROSITE profilePS5015710.637185214IPR007087Zinc finger, C2H2
SMARTSM003550.004185209IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280187209IPR007087Zinc finger, C2H2
SMARTSM003555.6217242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280219242IPR007087Zinc finger, C2H2
SMARTSM0035512245266IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.94E-10256313No hitNo description
Gene3DG3DSA:3.30.160.601.8E-8256297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.4E-5275300IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.341275305IPR007087Zinc finger, C2H2
PROSITE patternPS000280277300IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-4299327IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035513306332IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280308332IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEENPGYRGE HQGDMAGEGL GDVETPMVKD IRRYICQYCG ISRSKKHLIT SHILSHHQME  60
MDAEEEDDEA GEAEEEFSDR NTCQECGASF KKPAHLKQHT QSHSLERSFR CTVDDCTASY  120
KRKDHLNRHL LTHKGKLFKC PMDNCNREFS VQGNMKRHLK EFHDNGDSGN DGDHSTACAN  180
GQKRHVCDES GCGKVFMYPS KLQKHQDSHA KLESVEAFCA EPDCMKYFTN EECLKAHIRS  240
CHQYINCEIC GSRQLKRNMK RHLRTHEEES SSREIQCDFD GCSMTFSNAS NLRKHMKAVH  300
ENVRPFVCGF PGCSMRFAYK HVRNNHENSG FHTYTRGDFV ESDEQFLSRP RGGVKRKQVT  360
AEMLTRNLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-148327224190Aart
2i13_B1e-148327224190Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254260LKRNMKR
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546692.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546690.10.0PREDICTED: transcription factor IIIA-like
RefseqXP_010546691.10.0PREDICTED: transcription factor IIIA-like
RefseqXP_010546692.10.0PREDICTED: transcription factor IIIA-like
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1P8AV270.0A0A1P8AV27_ARATH; Transcription factor IIIA
STRINGXP_010546689.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-168transcription factor IIIA