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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010546691.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 369aa MW: 42440.4 Da PI: 7.3272 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg s s k++ ++Hi +H XP_010546691.1 34 YICQYCGISRSKKHLITSHILSH 56 89*******************96 PP | |||||||
2 | zf-C2H2 | 18.2 | 6.8e-06 | 82 | 103 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +Lk+H ++H XP_010546691.1 82 TCQECGASFKKPAHLKQHTQSH 103 6******************998 PP | |||||||
3 | zf-C2H2 | 20.2 | 1.6e-06 | 109 | 133 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dC+ s++rk++L+rH+ tH XP_010546691.1 109 FRCTvdDCTASYKRKDHLNRHLLTH 133 89*********************99 PP | |||||||
4 | zf-C2H2 | 18 | 7.7e-06 | 138 | 163 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ Fs + n+krH++ H XP_010546691.1 138 FKCPmdNCNREFSVQGNMKRHLKEfH 163 89*********************988 PP | |||||||
5 | zf-C2H2 | 18 | 7.7e-06 | 185 | 209 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C Cgk+F +s L++H+ +H XP_010546691.1 185 HVCDesGCGKVFMYPSKLQKHQDSH 209 789999****************998 PP | |||||||
6 | zf-C2H2 | 21.2 | 7.5e-07 | 276 | 300 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +C C+++Fs+ snL++H++ H XP_010546691.1 276 QCDfdGCSMTFSNASNLRKHMKAvH 300 688999***************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 15 | 34 | 56 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.279 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.04 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.4E-6 | 82 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.44E-9 | 93 | 135 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-9 | 108 | 135 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.076 | 109 | 138 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0023 | 109 | 133 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 111 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.1E-6 | 136 | 160 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.56E-7 | 136 | 164 | No hit | No description |
PROSITE profile | PS50157 | 10.596 | 138 | 168 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 138 | 163 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 140 | 163 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.0E-8 | 179 | 209 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.62E-6 | 181 | 211 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 185 | 214 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.004 | 185 | 209 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 187 | 209 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.6 | 217 | 242 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 219 | 242 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 12 | 245 | 266 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.94E-10 | 256 | 313 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-8 | 256 | 297 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.4E-5 | 275 | 300 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.341 | 275 | 305 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 277 | 300 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-4 | 299 | 327 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 13 | 306 | 332 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 308 | 332 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MEENPGYRGE HQGDMAGEGL GDVETPMVKD IRRYICQYCG ISRSKKHLIT SHILSHHQME 60 MDAEEEDDEA GEAEEEFSDR NTCQECGASF KKPAHLKQHT QSHSLERSFR CTVDDCTASY 120 KRKDHLNRHL LTHKGKLFKC PMDNCNREFS VQGNMKRHLK EFHDNGDSGN DGDHSTACAN 180 GQKRHVCDES GCGKVFMYPS KLQKHQDSHA KLESVEAFCA EPDCMKYFTN EECLKAHIRS 240 CHQYINCEIC GSRQLKRNMK RHLRTHEEES SSREIQCDFD GCSMTFSNAS NLRKHMKAVH 300 ENVRPFVCGF PGCSMRFAYK HVRNNHENSG FHTYTRGDFV ESDEQFLSRP RGGVKRKQVT 360 AEMLTRNLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 1e-14 | 83 | 272 | 24 | 190 | Aart |
2i13_B | 1e-14 | 83 | 272 | 24 | 190 | Aart |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 254 | 260 | LKRNMKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010546691.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010546690.1 | 0.0 | PREDICTED: transcription factor IIIA-like | ||||
Refseq | XP_010546691.1 | 0.0 | PREDICTED: transcription factor IIIA-like | ||||
Refseq | XP_010546692.1 | 0.0 | PREDICTED: transcription factor IIIA-like | ||||
Swissprot | Q84MZ4 | 0.0 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A1P8AV27 | 0.0 | A0A1P8AV27_ARATH; Transcription factor IIIA | ||||
STRING | XP_010546689.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-168 | transcription factor IIIA |