PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546689.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 387aa    MW: 44665.9 Da    PI: 8.1815
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.2e-06100121223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ Cg sF+ + +Lk+H ++H
  XP_010546689.1 100 TCQECGASFKKPAHLKQHTQSH 121
                     6******************998 PP
2zf-C2H220.11.7e-06127151123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+  dC+ s++rk++L+rH+ tH
  XP_010546689.1 127 FRCTvdDCTASYKRKDHLNRHLLTH 151
                     89*********************99 PP
3zf-C2H2188.2e-06156181123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kCp  +C++ Fs + n+krH++  H
  XP_010546689.1 156 FKCPmdNCNREFSVQGNMKRHLKEfH 181
                     89*********************988 PP
4zf-C2H2188.2e-06203227123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C    Cgk+F  +s L++H+ +H
  XP_010546689.1 203 HVCDesGCGKVFMYPSKLQKHQDSH 227
                     789999****************998 PP
5zf-C2H221.18e-07294318223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     +C    C+++Fs+ snL++H++  H
  XP_010546689.1 294 QCDfdGCSMTFSNASNLRKHMKAvH 318
                     688999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.27999126IPR007087Zinc finger, C2H2
SMARTSM003550.0499121IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-6100126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SuperFamilySSF576672.74E-9111153No hitNo description
PROSITE profilePS5015710.076127156IPR007087Zinc finger, C2H2
SMARTSM003550.0023127151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-9127153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280129151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-6154182No hitNo description
Gene3DG3DSA:3.30.160.606.5E-6154178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.596156186IPR007087Zinc finger, C2H2
SMARTSM003550.0026156181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-8197227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.86E-6199229No hitNo description
SMARTSM003550.004203227IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637203232IPR007087Zinc finger, C2H2
PROSITE patternPS000280205227IPR007087Zinc finger, C2H2
SMARTSM003555.6235260IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280237260IPR007087Zinc finger, C2H2
SMARTSM0035512263284IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.95E-10274331No hitNo description
PROSITE profilePS5015712.341293323IPR007087Zinc finger, C2H2
SMARTSM003555.4E-5293318IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-8294318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280295318IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4319345IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035513324350IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280326350IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MKLGFRVRDN WICFQCATVN GGKPWLSWRA SRRHGGRRSR RCGDTNGEGH KEVHLPVLWN  60
QQIKETSHHF SHSFPSPEMD AEEEDDEAGE AEEEFSDRNT CQECGASFKK PAHLKQHTQS  120
HSLERSFRCT VDDCTASYKR KDHLNRHLLT HKGKLFKCPM DNCNREFSVQ GNMKRHLKEF  180
HDNGDSGNDG DHSTACANGQ KRHVCDESGC GKVFMYPSKL QKHQDSHAKL ESVEAFCAEP  240
DCMKYFTNEE CLKAHIRSCH QYINCEICGS RQLKRNMKRH LRTHEEESSS REIQCDFDGC  300
SMTFSNASNL RKHMKAVHEN VRPFVCGFPG CSMRFAYKHV RNNHENSGFH TYTRGDFVES  360
DEQFLSRPRG GVKRKQVTAE MLTRNLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-1410129024190Aart
2i13_B2e-1410129024190Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278LKRNMKR
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546690.10.0PREDICTED: transcription factor IIIA-like
RefseqXP_010546691.10.0PREDICTED: transcription factor IIIA-like
RefseqXP_010546692.10.0PREDICTED: transcription factor IIIA-like
SwissprotQ84MZ41e-161TF3A_ARATH; Transcription factor IIIA
TrEMBLR0IDC61e-160R0IDC6_9BRAS; Uncharacterized protein
STRINGXP_010546689.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-149transcription factor IIIA