PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546608.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CPP
Protein Properties Length: 672aa    MW: 73623.6 Da    PI: 4.8909
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.53.5e-15453491240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+C+C++skClk+YC+Cfaag +C e C+C+dC+Nk 
  XP_010546608.1 453 SCKRCKCRRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKP 491
                     589**********************************96 PP
2TCR52.87.9e-17538577140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+gCnCkks+ClkkYCeCf  g+ Cs +C+C +CkN+ 
  XP_010546608.1 538 RHKRGCNCKKSSCLKKYCECFLMGVGCSPSCRCVGCKNTF 577
                     589***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-17452493IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.433453578IPR005172CRC domain
PfamPF036381.3E-10455490IPR005172CRC domain
SMARTSM011142.1E-17538579IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-12540576IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MDTPDKNRIA AVPLCNFEDS PVFKYINDLS PIEPVKSALA DNILNSFAFA SPSALFTSPQ  60
INPNRESRFS IKRHRSSPDI PNPVFLLDGT VNNSRDLPEA VKSSELRGEQ VKCDKFNQLD  120
KSSETKPLKE HFSLAIELAK ALKNGGDGCD IQMVSCDQIS AGTENGKGSI ESMTKSDEDT  180
QPNYPTELGV DLTLFQTDER ESYNGSGMTN SNSDDGGILD SEQQNQRIAD PGTNSLALAP  240
LQFSPVCHNS ENVNAGGFCG VQDASGAPDI TFSCSAEVIV NDSDAKTEDK EEKCFQPSRK  300
QRSIRRRCLT FDVGGSCKKK PLRDSTNDPP TEPASVNKVP SPEMLPVPSK KDPDDIPPIP  360
TIGLHLNGLV NTSTNQNKLI CKVGRVLSLA PMTSNQILDS QISTPVSTKR VLASCDNEIT  420
EEGPEKFTDA ECFDNDVLTG ERKQLDGLDE SVSCKRCKCR RSKCLKLYCD CFAAGLYCIE  480
PCSCQDCFNK PIHEELVMNT RRQIEARNPL AFAPKVVTSV DSASDFRDEN IKTPASARHK  540
RGCNCKKSSC LKKYCECFLM GVGCSPSCRC VGCKNTFGHK DEQFHFPCAQ EPDAVMINEE  600
DREQDVKDPN AHHDVDHNDI GAPSRKVLEC PYLESERCLQ VIPGEGTSEI ISSSNQMLLL  660
SSISPFPSLT SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1645757514120Protein lin-54 homolog
5fd3_B1e-1645757514120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546608.10.0PREDICTED: protein tesmin/TSO1-like CXC 4 isoform X1
SwissprotQ84JZ80.0TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLA0A178VLW70.0A0A178VLW7_ARATH; Uncharacterized protein
STRINGXP_010546608.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.10.0Tesmin/TSO1-like CXC domain-containing protein