PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546601.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 632aa    MW: 73011.9 Da    PI: 7.088
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.52.6e-16101183286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 
                     W+ +evlaL+++r+ +e+++         We++s+k++e gfer+p++Ckek+e+ ++ry   ++++      +++ + ++++f++le
  XP_010546601.1 101 WSSDEVLALLRLRSTVENWFPGF-----TWEHISRKLMEVGFERTPQECKEKFEEEERRYFGNNNSNDHInhyNNNGKGNIRMFSELE 183
                     ********************865.....9*******************************9998888754212355556777777776 PP
2trihelix89.43.9e-28469569186
        trihelix   1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                     rW+++evlaL+++r ++ ++++ +                 ++ plWe++skkm e g+ers+k+Ckekwen+nk+++k+k+ +kkr + +s+tc
  XP_010546601.1 469 RWPRDEVLALVNIRCSISTKINCDHhdhedqhhkdgpsstsKAPPLWERISKKMLELGYERSAKRCKEKWENINKYFRKTKDVSKKR-PVDSRTC 562
                     8**************6666666443333444555555556599*******************************************8.99999** PP

        trihelix  80 pyfdqle 86 
                     pyf ql 
  XP_010546601.1 563 PYFYQLS 569
                     ****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.797154IPR001005SANT/Myb domain
PfamPF138371.4E-1199183No hitNo description
PROSITE profilePS500906.574100152IPR017877Myb-like domain
SMARTSM007171.9466544IPR001005SANT/Myb domain
CDDcd122032.61E-22468549No hitNo description
PfamPF138372.8E-18468570No hitNo description
PROSITE profilePS500906.26469542IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MFHGGVPEQL RRFIAAPPQP RTPEMAAAAA TRATPFPVSF SSFETTDHFM NSVLGNNNHK  60
IIHHHDHHVD IKDAGNSRWM GPMNHDDDGH QYRHHHHHHP WSSDEVLALL RLRSTVENWF  120
PGFTWEHISR KLMEVGFERT PQECKEKFEE EERRYFGNNN SNDHINHYNN NGKGNIRMFS  180
ELEEFYHHHG HDEHVHDDDH VSCEDGHGQN KRQKPVEEPR NQAKDRMGQD MEEGPREEEE  240
EVGIHHGKSE NIENDGKSSS SSSSAMAMMM MMMGEKKKKK KKKRKKEGFQ LLKGFCEGLV  300
RNMIAQQEEL HRKVLEDMVK RDEEKVAREE AWKKQEMEMI NKELEIRAHE QALASDRNST  360
IIKFISKFTS LSEDDNHHHD HLNHHHHQQQ QHRHGNKVQS PSTSQSSSSL VLPETPNSKI  420
QTLSSQTRIS ESRLSFHHNN EPISVQTLKT NTHNPKPPKS DGNCDLGKRW PRDEVLALVN  480
IRCSISTKIN CDHHDHEDQH HKDGPSSTSK APPLWERISK KMLELGYERS AKRCKEKWEN  540
INKYFRKTKD VSKKRPVDSR TCPYFYQLSA LYSQGSLAGA TAGKEYSGGQ DPETRVVSSN  600
IESGDDPKMH VAANGDDYEK NTVQTSGFDF EF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276285KKKKKKKRKK
2277285KKKKKKRKK
3279284KKKKRK
4279285KKKKRKK
5281285KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546601.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546601.10.0PREDICTED: trihelix transcription factor GTL2 isoform X1
SwissprotQ8H1811e-174GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A078IRA50.0A0A078IRA5_BRANA; BnaC07g49430D protein
STRINGXP_010546601.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-142Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]