PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546509.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 468aa    MW: 51565.1 Da    PI: 8.3754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08149169526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+++   G CkyG++C+F H+
  XP_010546509.1 149 ICKYWIS-GNCKYGEQCRFLHS 169
                     7998888.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.633144171IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7144170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-7145169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-7147169IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5149169IPR000571Zinc finger, CCCH-type
SuperFamilySSF509784.64E-42171223IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.1E-40174463IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.27175214IPR001680WD40 repeat
PfamPF004000.052181213IPR001680WD40 repeat
PROSITE profilePS5008211.645182223IPR001680WD40 repeat
PROSITE profilePS5029420.698182468IPR017986WD40-repeat-containing domain
PRINTSPR003204.8E-7201215IPR020472G-protein beta WD-40 repeat
SMARTSM003206.2254291IPR001680WD40 repeat
SuperFamilySSF509784.64E-42261465IPR017986WD40-repeat-containing domain
SMARTSM003203.2E-5298335IPR001680WD40 repeat
PfamPF004008.1E-5300335IPR001680WD40 repeat
PROSITE profilePS5008212.681305344IPR001680WD40 repeat
PRINTSPR003204.8E-7322336IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780322336IPR019775WD40 repeat, conserved site
SMARTSM003203.7E-4338375IPR001680WD40 repeat
PfamPF004000.0094340374IPR001680WD40 repeat
PROSITE profilePS500829.038345384IPR001680WD40 repeat
PRINTSPR003204.8E-7362376IPR020472G-protein beta WD-40 repeat
SMARTSM0032037379422IPR001680WD40 repeat
SMARTSM0032028425462IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MTLGATKQFS GRKTTCGVNR YQDSAADIVV RRPRAPYYNR QRNGPYKGSR NLVWTQEHSR  60
RRSPDHDQPL NKRSRNLVWT QEQSRRSPDN QPQKNAAYDS NESPFSGISD TTLYQPRNDV  120
AHASKNSSVS SVRGCSLQNC IIPKSQGTIC KYWISGNCKY GEQCRFLHSW CTCPGFEMMA  180
ALEGHKKDLK GIALPLGSDG LYSASDDGTL RVWAYSTGQC MRVINLGAEA GSLISEGPWV  240
FIGMPNAVKA LNVQTAKDFH LEGPLGQVHA MAVANDMLFA GTSSGMISVW KGNTECDPFK  300
YVTSLTGHDS AVVCIVAGRQ YLYSGSVDQT IKVWDLNTLQ CTMTLRQHTD TVTSLLCWDQ  360
FLISGSLDGT VKAWAFSQSG ELEVIFTHRL EHGVRAISGM TDADVKPIIF CSCDNNTVFV  420
YDLPSFAERG RIFSTHTVGT LTIGDGGQIY TGDGSGKLRV WSLGNQRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-221394636322Tako8
6g6n_A4e-221394636322Tako8
6g6n_B4e-221394636322Tako8
6g6n_C4e-221394636322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546509.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like
RefseqXP_010546510.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like
SwissprotQ9FKR91e-172C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLV4L9701e-179V4L970_EUTSA; Uncharacterized protein
STRINGXP_010546509.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.11e-175C3H family protein