PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546408.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 286aa    MW: 32660.1 Da    PI: 9.2306
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.52.5e-21111161256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  XP_010546408.1 111 LYRGVRQRH-WGKWVAEIRLPKK---RTRLWLGTFDTAEEAALAYDQAAFKLRGE 161
                     59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-33110170No hitNo description
SuperFamilySSF541712.68E-23111169IPR016177DNA-binding domain
PROSITE profilePS5103223.261111168IPR001471AP2/ERF domain
SMARTSM003803.3E-37111174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-32111168IPR001471AP2/ERF domain
PRINTSPR003672.4E-11112123IPR001471AP2/ERF domain
PfamPF008472.3E-15112161IPR001471AP2/ERF domain
PRINTSPR003672.4E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAAALNSNSC REEFMKALAP FMKTSCSSSK PSLTHKSTNQ PEPVSNHVLQ TGPIGLNQLT  60
PAQILQIQIE FQNQNQVHGK GRDLYLLAAK PIPMKNTVAA ASSVVRKPAK LYRGVRQRHW  120
GKWVAEIRLP KKRTRLWLGT FDTAEEAALA YDQAAFKLRG EFSRLNFPYH TRRRDYKPFP  180
PSVNKKIQAI FDDVTPPEFQ IPARTDAGLS GFYETDPVMP KLEQEPSFPE KTEPGYPNDR  240
FVPESDKTFL DFSNDWTWDE RTSFGLEKYT SMEIDWDAVA KVSEWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19109168363ATERF1
3gcc_A2e-19109168363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546408.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546408.10.0PREDICTED: ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ21e-76ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A0D2ZR391e-82A0A0D2ZR39_BRAOL; Uncharacterized protein
STRINGXP_010546408.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.14e-69ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]