PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 199aa MW: 21838.2 Da PI: 5.1366

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010546135.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55	2e-17	101	151	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f t +Aa+a++ a+ kl+g XP_010546135.1 101 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFETDIDAARAYDCAAFKLRG 151 7******.******954..34***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.4E-31	100	160	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.632	101	159	IPR001471	AP2/ERF domain
SMART	SM00380	5.7E-35	101	165	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-22	101	160	IPR016177	DNA-binding domain
Pfam	PF00847	3.6E-12	101	151	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-13	102	113	IPR001471	AP2/ERF domain
CDD	cd00018	8.29E-23	109	159	No hit	No description
PRINTS	PR00367	4.0E-13	141	161	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MATVEEISAM EFMQTHLFED FKIPDGSIED FDFDSFISGL WSVEPVNPVP KEEPGSPVLD 60 LEAQSSSSSS SSAPVLSDMK TSPVSVSAQK TEMGFEETRR HYRGVRRRPW GKFAAEIRDP 120 AKKGSRIWLG TFETDIDAAR AYDCAAFKLR GRKAILNFPL DAGKYDAPAN SSRKRRRANG 180 SASQSSLSSS TDGDTISDA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-29	100	160	4	64	ATERF1
3gcc_A	3e-29	100	160	4	64	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	176	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010546135.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF270090	0.0	KF270090.1 Cleome hassleriana ERF, integrase-type DNA-binding superfamily protein, transducin, and protein kinase superfamily protein genes, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010546135.1	1e-144	PREDICTED: ethylene-responsive transcription factor ERF107
Swissprot	Q9LY05	3e-73	EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBL	T1YY77	1e-143	T1YY77_9ROSI; Integrase-type DNA-binding superfamily protein
STRING	XP_010546135.1	1e-143	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3229	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	2e-64	ERF family protein

Link Out ? help Back to Top
Entrez Gene	104818307

Publications ? help Back to Top
Huang CY, et al. Tandem oleosin genes in a cluster acquired in Brassicaceae created tapetosomes and conferred additive benefit of pollen vigor. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14480-5 [PMID:23940319] Kim H,Go YS,Suh MC DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol., 2018. 59(5): p. 966-977 [PMID:29425344]