PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546081.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 741aa    MW: 80728.7 Da    PI: 5.282
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.71.3e-23255308155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt+ LH+ F++a++++ G +kA+Pk+ile+m+v+gLt+e+++SHLQkYR+
  XP_010546081.1 255 KAKVVWTNSLHNLFLQAIRHI-GLDKAVPKKILEFMSVPGLTRENIASHLQKYRI 308
                     6799*****************.********************************6 PP
2Response_reg701e-23181351109
                     EEEESSSHHHHHHHHHHHHHTTC.....E..EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegy.....e..evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                     vl+vdD+p+v++++ ++l+  +y     +   v+ a++++eal  l+ ++  +D++++D  mpgm+G+el++ i +e  klp++v+++  ++e  
  XP_010546081.1  18 VLLVDDDPTVLSIVSTMLKTPKYkdssiTeiTVTPAKNSREALSVLQIQRdnIDIVITDYHMPGMNGVELTRVIDQEFGKLPVVVMSSDISNEIE 112
                     89*****************555532222311456789*******99655555**********************99999**************** PP

                     HHHHHTTESEEEESS--HHHHHH CS
    Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                      e ++ G++ f++Kp++p++l +
  XP_010546081.1 113 RETISNGGMCFIAKPVKPKDLAT 135
                     *******************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.4E-2915146No hitNo description
SuperFamilySSF521725.27E-2716145IPR011006CheY-like superfamily
SMARTSM004482.7E-2116137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.51617141IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-2018135IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.42E-2219141No hitNo description
PROSITE profilePS5129412.259252311IPR017930Myb domain
SuperFamilySSF466891.31E-18253312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-24253312IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-25255308IPR006447Myb domain, plants
PfamPF002492.0E-5258307IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MVFDQSFNSK NSVLNLTVLL VDDDPTVLSI VSTMLKTPKY KDSSITEITV TPAKNSREAL  60
SVLQIQRDNI DIVITDYHMP GMNGVELTRV IDQEFGKLPV VVMSSDISNE IERETISNGG  120
MCFIAKPVKP KDLATIWRCA LESKKRCKSM SVDGGDDDNG NDSAVAVSSS CKGAVASDGT  180
KGLGRKPYTG STLNDDDSDK VDHNVDGGSG EDKKKRKAAD SFGDDGDDDG DDDGDDDGDG  240
DGDGDADSRP SAPKKAKVVW TNSLHNLFLQ AIRHIGLDKA VPKKILEFMS VPGLTRENIA  300
SHLQKYRIFL KKVAERGAMQ SGSMSNRVMS SNFAYGHLNS SLPYYNHNAP YGTSSLSHRP  360
YNSELGLCLG QSRLLMTNNN IGQKTQNPYP YSNLNHSSYD RNRVGSTSLL PKMGNIPFYN  420
SATTTQTPSF LPQNGERRGL FQMGMNPGRI GQTSHSHGIG LQYGTSTSSG LNPNPKPRSY  480
NGTVYAGIRM NERGDLIGLG PIQGNANANT NDSSLGRGNG YMNRNLNNNF NGYASSSTHH  540
LRQGFSHLSA HQHSSSSSSS SASLFSHLQP FLRNAVITEN MGQSQGNIAN RLGQVDFVFP  600
EFDKPNKQPY QTQLSGEHRH AELPCDASNF QFNHNQVQVE TSSQNVEPEE SPFGMDNFLE  660
AITIEDTANG WIAENTSQAG SNGETLNSAS ASALMVYSPT LDNNPSQEQG AGDCVELTYF  720
NQEEDWNDDD FMDSLFNYGT H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21251314164ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546081.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546081.10.0PREDICTED: putative two-component response regulator ARR21
STRINGXP_010546081.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27070.19e-62response regulator 13