PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545969.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 668aa    MW: 74856 Da    PI: 7.8454
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.13.2e-1272806532374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkf 93 
                     v lL  c ea+++++ + +++++ rl +lasp+g +p++R++ay+te+La r++r+++++++  pp++ ++++ +e   a  l  +++v+Pi+kf
  XP_010545969.1 280 VGLLKGCLEAIDEKNIAPINHFIVRLGDLASPRGkTPLTRVTAYYTEGLALRITRMWPHIFHVTPPRDFERTDKEEDSGAAGLrfLNQVTPIPKF 374
                     668999****************************99********************************99999666666654444********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+taN+++l+a++g+ervHiiDfdi+qGlQWp+++q+La+Rp++p ++RiTg+g+    sk+el+etg+rL  fAe+l++pfef+  v++rled
  XP_010545969.1 375 IHFTANEMLLRAFQGKERVHIIDFDIKQGLQWPSFFQSLAARPNPPLHVRITGIGE----SKQELNETGDRLYGFAEALNLPFEFHS-VVDRLED 464
                     ********************************************************....***************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++l++L+vk+gE++aVn+v+qlh++l +++  +   ++++ l++s++P  +v++eqea+hn+  + +r++++l+yysa+fdsl+ +lp++s  r+
  XP_010545969.1 465 VRLWMLHVKEGESVAVNCVFQLHKTLYDTTGAAI--RDFMGLIRSTNPIALVIAEQEAEHNTDHLETRICNSLRYYSAIFDSLHFNLPTDSLIRV 557
                     **************************99988888..99********************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveee....sgslvlgWkdrpLvsvSa 372
                     k+E++ +grei+n+vaceg++r+erh+ +++Wr+ le+ GF+++ +se+++ q k+llr+++  + g++ve +    sg ++l W+d++L++vSa
  XP_010545969.1 558 KIEEM-FGREIRNIVACEGNHRQERHTGFRRWRRLLEQLGFRSLGVSEREVLQSKMLLRMYGggGGGFNVERRdedgSGGVTLRWSDQELYTVSA 651
                     *****.*******************************************************975556****55555688899************* PP

            GRAS 373 Wr 374
                     W+
  XP_010545969.1 652 WT 653
                     *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.958253627IPR005202Transcription factor GRAS
PfamPF035141.1E-124280653IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MLAGCSSSTL LSPTQRLRAE SPRTVQFHHH HQACHLPMNT QRLDLPCSSF SRKESSSNRS  60
SQSNRPLTRS VSLDSKSKAS SLKQHIKLPP LATTRGGEGF SWNKDKDNND QGGKNLKRLA  120
DEADSCLNRA KRKRGEREGQ QLGLGGSFWF EQFAGRNSPQ VPFSLTCSGD EDRVCFVPSE  180
VISQPLLSNP NWVDSVITEL AGIGNKDTES SRPTTTVKEA SGSSASSESH SLRYSLPEST  240
NGSRNPYSHE RVGARAGTSK EEDNNNNNHG NELQKDLELV GLLKGCLEAI DEKNIAPINH  300
FIVRLGDLAS PRGKTPLTRV TAYYTEGLAL RITRMWPHIF HVTPPRDFER TDKEEDSGAA  360
GLRFLNQVTP IPKFIHFTAN EMLLRAFQGK ERVHIIDFDI KQGLQWPSFF QSLAARPNPP  420
LHVRITGIGE SKQELNETGD RLYGFAEALN LPFEFHSVVD RLEDVRLWML HVKEGESVAV  480
NCVFQLHKTL YDTTGAAIRD FMGLIRSTNP IALVIAEQEA EHNTDHLETR ICNSLRYYSA  540
IFDSLHFNLP TDSLIRVKIE EMFGREIRNI VACEGNHRQE RHTGFRRWRR LLEQLGFRSL  600
GVSEREVLQS KMLLRMYGGG GGGFNVERRD EDGSGGVTLR WSDQELYTVS AWTPAEIGGS  660
SLSLARHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6528665426380Protein SCARECROW
5b3h_A3e-6528665425379Protein SCARECROW
5b3h_D3e-6528665425379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545969.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545969.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLD7KU230.0D7KU23_ARALL; Scarecrow transcription factor family protein
STRINGXP_010545969.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein