PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010545887.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 227aa MW: 26044.2 Da PI: 6.3674

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010545887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	85	1.5e-26	10	141	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya.tgkrknratk....sgyWkatgkd 89 +G++F+P+d++l+ +L+ kv+g ++ ik+vd+y +ePw Lp+ + + +++ewy+F+k+ ++ + kr++r+++ g+Wk+t + XP_010545887.1 10 VGLKFRPNDKDLI-SHLRWKVNGGGDSF---IKDVDVYGSEPWLLPHVT-EplfQDNEWYYFVKKTIDSTrKRKRQSRQVQkkenGGTWKSTSGE 99 79*********.89*****655...***********533.2355999*999766552456677753334459***** PP NAM 90 kevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128 +e+ + + ++g + L+f ++ + k ktdW+m eyrl XP_010545887.1 100 EEIRDGgNAVVIGHARNLTFMENevGSTKQMKTDWLMREYRL 141 97555669*****6522566778*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.603	8	157	IPR003441	NAC domain
SuperFamily	SSF101941	5.62E-33	9	157	IPR003441	NAC domain
Pfam	PF02365	1.5E-15	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MTMDDWQDIV GLKFRPNDKD LISHLRWKVN GGGDSFIKDV DVYGSEPWLL PHVTEPLFQD 60 NEWYYFVKKT IDSTRKRKRQ SRQVQKKENG GTWKSTSGEE EIRDGGNAVV IGHARNLTFM 120 ENEVGSTKQM KTDWLMREYR LPSHESQEWV VCRIRRKSNG RVNGDGRRMN QGNLGINSSI 180 GQNVGDAAFQ PFANIVDDEY AWIQGLDIDE LSSLLNEPFH GCALPLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-14	11	159	20	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-14	11	159	20	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-14	11	159	20	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-14	11	159	20	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-14	11	159	23	170	NAC domain-containing protein 19
3swm_B	1e-14	11	159	23	170	NAC domain-containing protein 19
3swm_C	1e-14	11	159	23	170	NAC domain-containing protein 19
3swm_D	1e-14	11	159	23	170	NAC domain-containing protein 19
3swp_A	1e-14	11	159	23	170	NAC domain-containing protein 19
3swp_B	1e-14	11	159	23	170	NAC domain-containing protein 19
3swp_C	1e-14	11	159	23	170	NAC domain-containing protein 19
3swp_D	1e-14	11	159	23	170	NAC domain-containing protein 19
4dul_A	1e-14	11	159	20	167	NAC domain-containing protein 19
4dul_B	1e-14	11	159	20	167	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010545887.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010545887.1	1e-170	PREDICTED: NAC domain-containing protein 6-like
STRING	XP_010545887.1	1e-169	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13336	4	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03490.1	7e-19	NAC domain containing protein 6