![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010545885.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 370aa MW: 42076.3 Da PI: 7.2448 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.7e-05 | 208 | 227 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_010545885.1 208 FSCPLCFKTFNRYNNMQMHM 227 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 292 | 314 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F k + ++H +++ XP_010545885.1 292 FACRKCGKAFAVKGDWRTHEKNC 314 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.61 | 208 | 230 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.1E-5 | 208 | 227 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 208 | 235 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 210 | 230 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.55E-6 | 278 | 312 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.9E-6 | 279 | 312 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 54 | 292 | 312 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.85 | 292 | 312 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 370 aa Download sequence Send to blast |
MSDPFSNLFS NGSWNYGFNY STCLPYVYNP HDYCYYTNNS NNTNPNMIST VATPEVDSPP 60 LRQALPLLSS SPIRNDQDQP HEYRYYSMDT DHSSSNVFDG HDHVGQNVTV DLCLGLPNLI 120 SNSSSCNGGG SSSGDIVPNA SEEHHHHHHH HPHQDQELEI TVASHHHHHH HHHHHHDHGH 180 DHHGGGLNKG HQYWIPTPAQ IMIGPTQFSC PLCFKTFNRY NNMQMHMWGH GSQYRKGPES 240 LRGTQPTAML KLPCYCCSPG CKNNIDNPKA RPLKDFRTLQ THYKRKHGTR PFACRKCGKA 300 FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR SLKDHIKAFG NDHVACGIDD FFGEQDDEAA 360 SDVDQYYNNC |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010545885.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010545885.1 | 0.0 | PREDICTED: zinc finger protein WIP5 | ||||
Swissprot | Q8W030 | 1e-148 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A078J2W5 | 1e-149 | A0A078J2W5_BRANA; BnaA01g36760D protein | ||||
STRING | XP_010545885.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51220.1 | 1e-143 | WIP domain protein 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|