PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010545872.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GATA

Protein Properties

Length: 334aa MW: 36765.1 Da PI: 9.9992

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010545872.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	30.8	4e-10	187	206	1	20
GATA 1 CsnCgttkTplWRrgpdgnk 20 Cs C+ttkTplWR+gp+g+k XP_010545872.1 187 CSDCNTTKTPLWRSGPRGPK 206 ******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.6E-4	181	221	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	5.23E-5	181	205	No hit	No description
PROSITE profile	PS50114	9.275	185	204	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	4.3E-7	185	206	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	1.5E-7	187	206	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MNSNFHYPID LNEDQNHQPF FCTIGSSHHQ ASSSSSTSSS SLSYLPFLIN SQQEHVGYNT 60 ANYHGDHDCL SQPLEAKMLT SNGGSSCDHM VPKKETRLKL TIRKKEQRTD LPLVQNQTKS 120 NQSASSPTTT TVKWMSSKMR LMKKMIAHKR PMDRNLHDVD HKKKTSPDHS TVYDNGHGHN 180 NGVIRVCSDC NTTKTPLWRS GPRGPKVNPH SNYQIQFTAG SNDSPAGQPP QQLALAKKKT 240 HNKNKRTSDH FSPPPKAKKC KITAVDASPA AADDSGTQSK SSPSSSSSSS SNKFGFDDLT 300 IILSKSSAFQ KVFPQDEREA AILLMALSYG MVHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	240	KKKTH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (PubMed:22102866, PubMed:25077795). Involved in the modulation of chloroplast development, growth and division in a cytokinin-dependent manner (PubMed:22102866, PubMed:22811435). Repressor of the gibberellic acid (GA) signaling pathway that regulates flowering and modulates greening, in a SOC1-dependent manner (PubMed:20844019, PubMed:23739688, PubMed:25077795). Prevents the accumulation of SOC1 during flowering (PubMed:23739688). Promotes chlorophyll biosynthesis throughout the plant, by regulating chlorophyll biosynthetic genes (e.g. HEMA1 and GUN4) and chloroplast localized glutamate synthase (e.g. GLU1) (PubMed:18417639, PubMed:20844019, PubMed:21453984, PubMed:22102866, PubMed:23878229, PubMed:25077795). Involved in the regulation of sugar-sensing genes (e.g. HXK1, HXK2, STP13 and PLT6) (PubMed:18417639). Regulator of germination, senescence, elongation growth and flowering time (PubMed:20844019, PubMed:22102866, PubMed:23878229). Influences also leaf starch content (PubMed:22102866). {ECO:0000269\|PubMed:18417639, ECO:0000269\|PubMed:20844019, ECO:0000269\|PubMed:21453984, ECO:0000269\|PubMed:22102866, ECO:0000269\|PubMed:22811435, ECO:0000269\|PubMed:23739688, ECO:0000269\|PubMed:23878229, ECO:0000269\|PubMed:25077795}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010545872.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light (including both red and white lights) (PubMed:17208962, PubMed:17587690). Levels follow a circadian and diurnal rythm, with a peak at 20 hours, thus preempting dawn (PubMed:17208962). Activated by gibberellic acid (GA) (PubMed:20844019). Induced by cytokinin and derivatives (e.g. benzyladenine, t-Zeatin and 6-benzylaminopurine) in light conditions (PubMed:16212609, PubMed:17587690, PubMed:21453984, PubMed:22811435). Triggered by nitrate (PubMed:16262716). Negatively regulated by AP3/PI (PubMed:18417639). Strong accumulation during cold imbibition of nondormant seeds, but not at warm temperatures. Regulated by PIF transcription factors (PubMed:20844019). Repressed by HAN (PubMed:23335616). Inhibited by SOC1 (PubMed:23739688). Down-regulated by auxin (2,4D) and auxin response factors (e.g. ARF2 and ARF7) (PubMed:23878229). {ECO:0000269\|PubMed:16212609, ECO:0000269\|PubMed:17208962, ECO:0000269\|PubMed:17587690, ECO:0000269\|PubMed:18417639, ECO:0000269\|PubMed:20844019, ECO:0000269\|PubMed:21453984, ECO:0000269\|PubMed:22811435, ECO:0000269\|PubMed:23335616, ECO:0000269\|PubMed:23739688, ECO:0000269\|PubMed:23878229, ECO:0000303\|PubMed:16262716}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010545872.1	0.0	PREDICTED: GATA transcription factor 21
Swissprot	Q9SZI6	1e-72	GAT22_ARATH; Putative GATA transcription factor 22
TrEMBL	V4LG70	2e-84	V4LG70_EUTSA; Uncharacterized protein
STRING	XP_010545872.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2109	26	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26150.1	7e-66	cytokinin-responsive gata factor 1

Publications ? help Back to Top
Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795] Behringer C,Schwechheimer C B-GATA transcription factors - insights into their structure, regulation, and role in plant development. Front Plant Sci, 2015. 6: p. 90 [PMID:25755661] Ranftl QL,Bastakis E,Klermund C,Schwechheimer C LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2295-311 [PMID:26829982] Klermund C, et al. LLM-Domain B-GATA Transcription Factors Promote Stomatal Development Downstream of Light Signaling Pathways in Arabidopsis thaliana Hypocotyls. Plant Cell, 2016. 28(3): p. 646-60 [PMID:26917680] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Kobayashi K,Iwase A Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal. Plant Signal Behav, 2017. 12(6): p. e1338999 [PMID:28594268] Bastakis E,Hedtke B,Klermund C,Grimm B,Schwechheimer C LLM-Domain B-GATA Transcription Factors Play Multifaceted Roles in Controlling Greening in Arabidopsis. Plant Cell, 2018. 30(3): p. 582-599 [PMID:29453227]