PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010545749.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 709aa MW: 81722.9 Da PI: 7.8308

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010545749.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.8	6.3e-22	98	181	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH l XP_010545749.1 98 NYYNCYAKEVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHLL 181 69***************************************9988.....99*******************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-19	98	181	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.1E-26	300	392	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.211	586	622	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-6	597	624	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MEGIETSGGD VQAAAYLQTD ESRSRNEPAS DGERILQMGE ALGGREQVVV DCEFNDSQQK 60 TEDAATEFGS QSSLHAENKE FDAPAVGMEF ESYDDAYNYY NCYAKEVGFR VRVKNSWFKR 120 NSKEKYGAVL CCSSQGFKRI KDVNRLRKET RTGCPAMIRM RLVDSKRWRV LEVTLEHNHL 180 LGCRIYKSVK KIGTGIKRKS VSSPDSEVKT IKLYRALVMD AGDNANQNSS LIQFQGFSGS 240 PNVLNLRRGD STAIYNYFCR MQLTNPSFFY LMDVTDEGQL RNVFWADAFS RASCSYFGDV 300 IYIDSTYLSG KYEIPLVTIV GINHHGQTTL LGCGLLAGET TESYHWLLKT WFSLMRCSPQ 360 TIVTDRCKPL EAAISVVFPR SNHRFILSHI MRKVPEKLGG LRNYDVLRKA FGKAVYETLK 420 VVEFEAAWGF MVQHFGVIDN EWFRSLYEDR ARWSPVYLKD AFFAGLATAR PGETLSPFFE 480 KYIHKQTPLK EFLDKYELAI QKKRREETVA DIESRSSNPQ LRTRCSYEMQ LSRIYTREMF 540 KRFQGEVEEM YSCFSTTQLH IDGPFIIFLV KERVLSESNR REIRDFEVLY DRSAGEVRCI 600 CNCFNFYGYL CRHALCVLNF NGVEEIPEKY VLPRWRKDYK RVNIPVPDHG SFGEGMDRVQ 660 CYEQLYRGAL QVVEEGAISM EHYKAALQML QESLGRVHNV EVQKHGTEY

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MEGIETSGGD VQAAAYLQTD ESRSRNEPAS DGERILQMGE ALGGREQVVV DCEFNDSQQK  60
TEDAATEFGS QSSLHAENKE FDAPAVGMEF ESYDDAYNYY NCYAKEVGFR VRVKNSWFKR  120
NSKEKYGAVL CCSSQGFKRI KDVNRLRKET RTGCPAMIRM RLVDSKRWRV LEVTLEHNHL  180
LGCRIYKSVK KIGTGIKRKS VSSPDSEVKT IKLYRALVMD AGDNANQNSS LIQFQGFSGS  240
PNVLNLRRGD STAIYNYFCR MQLTNPSFFY LMDVTDEGQL RNVFWADAFS RASCSYFGDV  300
IYIDSTYLSG KYEIPLVTIV GINHHGQTTL LGCGLLAGET TESYHWLLKT WFSLMRCSPQ  360
TIVTDRCKPL EAAISVVFPR SNHRFILSHI MRKVPEKLGG LRNYDVLRKA FGKAVYETLK  420
VVEFEAAWGF MVQHFGVIDN EWFRSLYEDR ARWSPVYLKD AFFAGLATAR PGETLSPFFE  480
KYIHKQTPLK EFLDKYELAI QKKRREETVA DIESRSSNPQ LRTRCSYEMQ LSRIYTREMF  540
KRFQGEVEEM YSCFSTTQLH IDGPFIIFLV KERVLSESNR REIRDFEVLY DRSAGEVRCI  600
CNCFNFYGYL CRHALCVLNF NGVEEIPEKY VLPRWRKDYK RVNIPVPDHG SFGEGMDRVQ  660
CYEQLYRGAL QVVEEGAISM EHYKAALQML QESLGRVHNV EVQKHGTEY

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010545749.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010545749.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1J3GPJ1	0.0	A0A1J3GPJ1_NOCCA; Protein FAR1-RELATED SEQUENCE 6
STRING	XP_010545749.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]