PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545612.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 301aa    MW: 33091.9 Da    PI: 8.9062
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.2e-15218256135
            GATA   1 CsnCgttk..TplWRrgp..dgnktLCnaCGlyyrkkgl 35 
                     C++Cgt++  Tp++Rrgp  +g++tLCnaCGl ++ kg+
  XP_010545612.1 218 CRHCGTSEksTPMMRRGPkaEGPRTLCNACGLNWANKGT 256
                     ************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.65572107IPR010399Tify domain
SMARTSM009795.6E-772107IPR010399Tify domain
PfamPF062003.3E-877106IPR010399Tify domain
PROSITE profilePS5101711.806142184IPR010402CCT domain
PfamPF062031.0E-11142184IPR010402CCT domain
SMARTSM004014.2E-8212267IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-11214272No hitNo description
Gene3DG3DSA:3.30.50.101.7E-13216261IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.11E-11217262No hitNo description
PROSITE patternPS003440218247IPR000679Zinc finger, GATA-type
PfamPF003201.8E-12218256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDGLHGRDAR VHMAEAQDPM NVQYEHHDLR HINNESDMVD EHTGRMNEGV EMGIPSRPGN  60
LSDTRGDMVD HGGENGDQLT LSFQGQLYVF DSVSAEKLQA TLRLLGGREI PQTASTTLGS  120
STTPQNNRCL SGTPQRSSVP QRLASLVRFR EKRIGRNFDK KIRYSVRKEV ALRMQRNKRQ  180
FTSAKSNDDD SASAGSSLGS NHSWGVERCG SQTREISCRH CGTSEKSTPM MRRGPKAEGP  240
RTLCNACGLN WANKGTLRDL SKATQNMAKP PWPIEGTRVA DSGDGTFGFN PGVSMNTAQC  300
V
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545612.10.0PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 24
SwissprotQ8H1G01e-131GAT28_ARATH; GATA transcription factor 28
TrEMBLR0IMP11e-129R0IMP1_9BRAS; Uncharacterized protein
STRINGXP_010545612.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-120ZIM-like 1