PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010545511.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TALE

Protein Properties

Length: 612aa MW: 69261.4 Da PI: 7.7255

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010545511.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	2.9e-09	407	444	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps ++ LA+++gL+ +qV++WF N R + XP_010545511.1 407 FEHflNPYPSDVDKHILARQTGLSRSQVSNWFINARVR 444 665569******************************88 PP
2	BELL	110.6	9e-36	271	342	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+kakLls+l+e+d+rY++y++q+++ +++Fea+ag+g+a+ Yt+lA ka+SrhFrcL+d +++qi XP_010545511.1 271 EFMELQKRKAKLLSMLDEIDRRYRHYRDQMRAAVAAFEAAAGIGAAETYTALAAKAMSRHFRCLRDCVVGQI 342 679*******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.6E-55	191	340	IPR006563	POX domain
Pfam	PF07526	4.4E-44	196	338	IPR006563	POX domain
PROSITE profile	PS50071	12.357	385	448	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.7E-28	387	460	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-9	388	452	IPR001356	Homeobox domain
CDD	cd00086	9.72E-12	388	449	No hit	No description
SuperFamily	SSF46689	5.56E-18	389	456	IPR009057	Homeodomain-like
Pfam	PF05920	7.3E-18	405	444	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MARDFSASGE ILSTANPTTN INTHHRLHHQ SEMIHHIHGF DDMNPSNHHH HPHHNHDQIF 60 SLNTKTGLID FSKRQQHHQH QRISVTSGVE ETSGGENLLL EDSTSSMRCC NVVNLPCEVN 120 EERLTTTTTT RTRPSQGLSL SLSSSNPTSI SLHSFELRPH TARQGYFGKT HNNLQHTQMV 180 MNNNSHHHHH QDQFQILRSK YLIPAHEILN EFCSLGTKES DEAIITMVMK QKNQKVKQQL 240 KQWEGNDNKD NHDASASASS RKHVPPLHSL EFMELQKRKA KLLSMLDEID RRYRHYRDQM 300 RAAVAAFEAA AGIGAAETYT ALAAKAMSRH FRCLRDCVVG QIEAMGERQD PVAPGTTRGE 360 TPRLRLLDQA FRQQKVYRQL SLVEAHPWRP QRGLPENAVS ILRAWLFEHF LNPYPSDVDK 420 HILARQTGLS RSQVSNWFIN ARVRLWKPMI EEMYSEETRG ERNGNIINRQ ENVMLTDPKP 480 EPNPMIRVDP ESLSYMITNP NTKISQSHRQ GATPFGSTFD FSSYGHQAVT YAGDSSNQGL 540 EEGTRGVSLT LGLQRHNGNS GVSLAFSPAA SLFYGDCQQG SVQYSTAMLD GDESQNLPYR 600 NLIGAQLLHD IV

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MARDFSASGE ILSTANPTTN INTHHRLHHQ SEMIHHIHGF DDMNPSNHHH HPHHNHDQIF  60
SLNTKTGLID FSKRQQHHQH QRISVTSGVE ETSGGENLLL EDSTSSMRCC NVVNLPCEVN  120
EERLTTTTTT RTRPSQGLSL SLSSSNPTSI SLHSFELRPH TARQGYFGKT HNNLQHTQMV  180
MNNNSHHHHH QDQFQILRSK YLIPAHEILN EFCSLGTKES DEAIITMVMK QKNQKVKQQL  240
KQWEGNDNKD NHDASASASS RKHVPPLHSL EFMELQKRKA KLLSMLDEID RRYRHYRDQM  300
RAAVAAFEAA AGIGAAETYT ALAAKAMSRH FRCLRDCVVG QIEAMGERQD PVAPGTTRGE  360
TPRLRLLDQA FRQQKVYRQL SLVEAHPWRP QRGLPENAVS ILRAWLFEHF LNPYPSDVDK  420
HILARQTGLS RSQVSNWFIN ARVRLWKPMI EEMYSEETRG ERNGNIINRQ ENVMLTDPKP  480
EPNPMIRVDP ESLSYMITNP NTKISQSHRQ GATPFGSTFD FSSYGHQAVT YAGDSSNQGL  540
EEGTRGVSLT LGLQRHNGNS GVSLAFSPAA SLFYGDCQQG SVQYSTAMLD GDESQNLPYR  600
NLIGAQLLHD IV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-15	394	452	5	63	Homeobox protein Meis2
3k2a_B	5e-15	394	452	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010545511.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010545511.1	0.0	PREDICTED: homeobox protein BEL1 homolog
Swissprot	Q38897	0.0	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	E4MWG9	0.0	E4MWG9_EUTHA; mRNA, clone: RTFL01-17-O06
TrEMBL	V4LWA4	0.0	V4LWA4_EUTSA; Uncharacterized protein
STRING	XP_010545511.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5866	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	0.0	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]