PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545360.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 727aa    MW: 79039.1 Da    PI: 6.1883
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.2e-06451471525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++f   G+C++Gd+C F+H
  XP_010545360.1 451 PCNNFTTKGFCHRGDNCLFSH 471
                     7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.577392419IPR000571Zinc finger, CCCH-type
SMARTSM003560.17393418IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5393417IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549421448IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027421447IPR000571Zinc finger, CCCH-type
SMARTSM003561.1449473IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5450473IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.976451474IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MESTVEAPFS LRRRRSHLPS RTYLSLVRIF SGFSGKSRVS LATPSVLQEL VLRSDDNVDN  60
EAAQVSLKET CEPGEICPPS GNTEPENSSM LEARTPQDQS GAAQCRKDVG LGESRDVPDY  120
TENDGMDGRS QKIMDELELM LNEEDDLLPE DCMNLLEILE VSDGSSNMIA SLEDNAKEPL  180
DPRITSEIQG DLEEGNKKMS ESFDLPPGKG MAEDGNSSHG FATNVTQMIR DEDIEEGEIF  240
GDVNINYDDL HLGEDEPVER MDEEQVTDDT IDDGGTNDIY SANRQNLSSI PSNAVVSLPE  300
VVCEKGRKLD AEVGNLDDHM TDDEKVKSRG SGSHETSCKD KNSNVGSAKK KRSARSEKNN  360
SKKKANFRKR RAEERRLLGV KRLKLKPVVA KPKVIKYCCH YLKGRCQKGE NCRYSHDIVP  420
LTKSSPCCYF ATQSCMKGED CPFDHDLSKY PCNNFTTKGF CHRGDNCLFS HKGTPGCALD  480
ASKSGTPNAS GPSSLNSVSA ASFSFGVSPQ NTNKPTTTKP PTAFPSRLSS PVSFMKTSSP  540
KTNEHEKAGT PPRKPSVPPK GISFLSLDKT SSGNIPKMPQ HEQASSPSVE NILKDALQKT  600
TSKTTPITGN PLPPASSSSP PKGISFLSFG SDRFKGKTLA NAPDGQHERQ MSSQPSTSGQ  660
LKATPIFQTQ KTLISALKLA AELDPGKTKK CTNDPAAVNK LDTDNKGDAA HSRNNSSKIL  720
EFLASLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349370KKRSARSEKNNSKKKANFRKRR
2375383RLLGVKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545360.10.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X2
STRINGXP_010545359.10.0(Tarenaya hassleriana)