PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545308.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 621aa    MW: 67490.5 Da    PI: 5.9942
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32265322260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK vkgse+prsYY+Cts +C v+kkvers+ +++++ei+Y+g Hnh+k
  XP_010545308.1 265 EDGYNWRKYGQKLVKGSEYPRSYYKCTSLNCLVRKKVERSR-EGQITEIIYKGAHNHPK 322
                     8****************************************.***************85 PP
2WRKY104.46.3e-33438496159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d + v++tYeg+Hnh+
  XP_010545308.1 438 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLESVITTYEGKHNHD 496
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.811259323IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-28262323IPR003657WRKY domain
SuperFamilySSF1182903.27E-25263323IPR003657WRKY domain
SMARTSM007741.3E-35264322IPR003657WRKY domain
PfamPF031061.4E-24265321IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36423498IPR003657WRKY domain
SuperFamilySSF1182901.57E-28430498IPR003657WRKY domain
PROSITE profilePS5081137.711433498IPR003657WRKY domain
SMARTSM007741.4E-37438497IPR003657WRKY domain
PfamPF031064.9E-25439496IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MTGFDDNVAV VSELVPFSPS PRTLFSAVLG EETSSKPVLE RFLPLNQGQI GLEDVGKKGS  60
SQTSLQLSEE KPTSRGCLGE RIAARAGFNA LKVKTENVRS HCLTITSPGL SPATLLESPV  120
FLLNPSAQPS PTTGKFSSSG PSDATDDEFF DDIGGSFTFQ HVSRSSSSFI PGTTAKVSPF  180
SQYFFPGTEM SFDYGCNRSW NIETANLHAD FPGTSSDGHN SGNDTDPDEQ TIPEATNIGS  240
RPDGIQDEEQ RRDGGDSVAG GAPAEDGYNW RKYGQKLVKG SEYPRSYYKC TSLNCLVRKK  300
VERSREGQIT EIIYKGAHNH PKPSSPSRRS AIRTDQDEQW SCIGRDSSWA GTLQAGADEC  360
AEDQSGPMQV QGGTHHESVD ASSTFSNAED GEEGEEDETE SKRRKFEAYA IEASGATATR  420
GVREPRVVVQ TTSDVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTAPGCT VRKHVERASH  480
DLESVITTYE GKHNHDVPVA RTSGSAALHT HMHRPEPLNR FERLVTGSAP FGRPFSFRPQ  540
LGGFSFGLGQ TGHPNLAIPG LAIRQGNLPS FPVRPFLLPR TVGDSGLMLS EPKVEPMSET  600
GLRLSGSSSV YGQIMNRLSD M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-36265498878Probable WRKY transcription factor 4
2lex_A8e-36265498878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545308.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_010545309.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLV4LSF00.0V4LSF0_EUTSA; Uncharacterized protein
STRINGXP_010545308.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]