PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545271.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 492aa    MW: 54093.2 Da    PI: 6.6757
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.84.1e-32138195260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  XP_010545271.1 138 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 195
                     8****************************************.***************85 PP
2WRKY107.19e-34309367159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_010545271.1 309 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAAGCPVRKHVERASHDPKAVITTYEGKHNHD 367
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.766132196IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-27134196IPR003657WRKY domain
SuperFamilySSF1182904.84E-25136196IPR003657WRKY domain
SMARTSM007743.2E-34137195IPR003657WRKY domain
PfamPF031061.0E-24138194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37294369IPR003657WRKY domain
SuperFamilySSF1182901.96E-29301369IPR003657WRKY domain
PROSITE profilePS5081138.825304369IPR003657WRKY domain
SMARTSM007747.7E-39309368IPR003657WRKY domain
PfamPF031063.4E-26310367IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MINEAEPSPT TGSLFKPQPV HGSISSSCYP GSAVRLNAFD EKKSSEFEFR PDPVSNMVSA  60
ELDKQRIEPP VQFQGHCLSH APSLTSGAVA SSSELSRPTH PLQTTPAGSD IPAVSDVDES  120
NQTSQNDQKG NAPQILADDG YNWRKYGQKH VKGSEFPRSY YKCTHPNCEV KKLFERSHDG  180
QITEIVYKGT HDHPKPQPSR RNSGGLLMSA QEERLDKFSS LTGRDEKGSS MCNNMSQPFE  240
QNGNPEVSPV SASEEGGEIA TSRNNDDLDG DDPFSKRRRI DDCMEITPLV KPIREPRVVV  300
QTLSEVDILD DGYRWRKYGQ KVVRGNPNPR SYYKCTAAGC PVRKHVERAS HDPKAVITTY  360
EGKHNHDVPT ARSNNNNNNN HHHDISAGPP RFRPEELDTI SLDLGVGMAS GSGPPDHTSS  420
ANEHQTRQLN SGAGFRFVHA TPVNSYYAAL NGNANQYGQR ETTSEAQTGE NSALNHSPYT  480
YAQSIGRIQS GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37136369877Probable WRKY transcription factor 4
2lex_A6e-37136369877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275279KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545271.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545268.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLD7MF750.0D7MF75_ARALL; WRKY DNA-binding protein 20
STRINGXP_010545268.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.10.0WRKY family protein