PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545269.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 510aa    MW: 56231.8 Da    PI: 7.1928
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545269.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.3e-32156213260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  XP_010545269.1 156 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 213
                     8****************************************.***************85 PP
2WRKY1079.5e-34327385159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_010545269.1 327 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAAGCPVRKHVERASHDPKAVITTYEGKHNHD 385
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.766150214IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-27152214IPR003657WRKY domain
SuperFamilySSF1182905.1E-25154214IPR003657WRKY domain
SMARTSM007743.2E-34155213IPR003657WRKY domain
PfamPF031061.1E-24156212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37312387IPR003657WRKY domain
SuperFamilySSF1182902.09E-29319387IPR003657WRKY domain
PROSITE profilePS5081138.825322387IPR003657WRKY domain
SMARTSM007747.7E-39327386IPR003657WRKY domain
PfamPF031063.6E-26328385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MRASVFICLA CCERKHYQNS RKAEPSPTTG SLFKPQPVHG SISSSCYPGS AVRLNAFDEK  60
KSSEFEFRPD PVSNMVSAEL DKQRIEPPVQ FQGHCLSHAP SLTSGAVASS SELSRPTHPL  120
QTTPAGSDIP AVSDVDESNQ TSQNDQKGNA PQILADDGYN WRKYGQKHVK GSEFPRSYYK  180
CTHPNCEVKK LFERSHDGQI TEIVYKGTHD HPKPQPSRRN SGGLLMSAQE ERLDKFSSLT  240
GRDEKGSSMC NNMSQPFEQN GNPEVSPVSA SEEGGEIATS RNNDDLDGDD PFSKRRRIDD  300
CMEITPLVKP IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTAAGCPV  360
RKHVERASHD PKAVITTYEG KHNHDVPTAR SNNNNNNNHH HDISAGPPRF RPEELDTISL  420
DLGVGMASGS GPPDHTSSAN EHQTRQLNSG AGFRFVHATP VNSYYAALNG NANQYGQRET  480
TSEAQTGENS ALNHSPYTYA QSIGRIQSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36154387877Probable WRKY transcription factor 4
2lex_A1e-36154387877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293297KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545269.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLD7MF750.0D7MF75_ARALL; WRKY DNA-binding protein 20
STRINGXP_010545268.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.10.0WRKY family protein