PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545163.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 288aa    MW: 32994.8 Da    PI: 6.7996
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-292777151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRrng++KKA ELS+LCdaevaviifsstgk+ye+ss
  XP_010545163.1 27 KRIENVNSRQVTFSKRRNGLMKKARELSILCDAEVAVIIFSSTGKVYEFSS 77
                    79***********************************************96 PP

2K-box56.51.2e-191172011498
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        ++q+++ Lk e+e L  +  +++G++L+ Ls+ eL +Le+qL+++l +i+++K+++ll+qie+++ +ek++ een++Lr++l
  XP_010545163.1 117 DDASRQNSDFLKTELERLHLSYERMKGKELNGLSFPELLSLENQLNEALLSIKDQKTQVLLDQIERSRFQEKRALEENEKLRQQL 201
                     55678999***************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-421978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.9551979IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-3320105IPR002100Transcription factor, MADS-box
CDDcd002651.12E-422094No hitNo description
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-292141IPR002100Transcription factor, MADS-box
PfamPF003194.3E-272875IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-294156IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-295677IPR002100Transcription factor, MADS-box
PfamPF014869.3E-17116201IPR002487Transcription factor, K-box
PROSITE profilePS5129712.354117207IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MHIYDNTPLI SYLVFFVEMG RGRIEIKRIE NVNSRQVTFS KRRNGLMKKA RELSILCDAE  60
VAVIIFSSTG KVYEFSSSSM QQTLSRYGYS SSTSDHIHQR EILQHQRPHH CPLQDNDDAS  120
RQNSDFLKTE LERLHLSYER MKGKELNGLS FPELLSLENQ LNEALLSIKD QKTQVLLDQI  180
ERSRFQEKRA LEENEKLRQQ LVKSGRSSSG PSELTPVNAV SRMLAEFPDM TRRTGGESSS  240
SDDDDNDSGD RHSDTFLHLG LSSEYNRKRK TPKIESVCET SWSQAASD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-211987169MEF2C
5f28_B6e-211987169MEF2C
5f28_C6e-211987169MEF2C
5f28_D6e-211987169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545163.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545163.10.0PREDICTED: agamous-like MADS-box protein AGL18 isoform X1
SwissprotQ9M2K86e-95AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A087GYM21e-102A0A087GYM2_ARAAL; Uncharacterized protein
STRINGXP_010545163.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-92AGAMOUS-like 18