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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_010545163.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family |
MIKC_MADS |
Protein Properties |
Length: 288aa MW: 32994.8 Da PI: 6.7996 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_010545163.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 93 | 1.4e-29 | 27 | 77 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien rqvtfskRrng++KKA ELS+LCdaevaviifsstgk+ye+ss
XP_010545163.1 27 KRIENVNSRQVTFSKRRNGLMKKARELSILCDAEVAVIIFSSTGKVYEFSS 77
79***********************************************96 PP
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2 | K-box | 56.5 | 1.2e-19 | 117 | 201 | 14 | 98 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
++q+++ Lk e+e L + +++G++L+ Ls+ eL +Le+qL+++l +i+++K+++ll+qie+++ +ek++ een++Lr++l
XP_010545163.1 117 DDASRQNSDFLKTELERLHLSYERMKGKELNGLSFPELLSLENQLNEALLSIKDQKTQVLLDQIERSRFQEKRALEENEKLRQQL 201
55678999***************************************************************************97 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 8.1E-42 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.955 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-33 | 20 | 105 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.12E-42 | 20 | 94 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 21 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-29 | 21 | 41 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-27 | 28 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-29 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-29 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.3E-17 | 116 | 201 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.354 | 117 | 207 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009555 | Biological Process | pollen development |
GO:0009910 | Biological Process | negative regulation of flower development |
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MHIYDNTPLI SYLVFFVEMG RGRIEIKRIE NVNSRQVTFS KRRNGLMKKA RELSILCDAE 60 VAVIIFSSTG KVYEFSSSSM QQTLSRYGYS SSTSDHIHQR EILQHQRPHH CPLQDNDDAS 120 RQNSDFLKTE LERLHLSYER MKGKELNGLS FPELLSLENQ LNEALLSIKD QKTQVLLDQI 180 ERSRFQEKRA LEENEKLRQQ LVKSGRSSSG PSELTPVNAV SRMLAEFPDM TRRTGGESSS 240 SDDDDNDSGD RHSDTFLHLG LSSEYNRKRK TPKIESVCET SWSQAASD
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. |