PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545101.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 328aa    MW: 37811.7 Da    PI: 6.5283
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545101.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63.2e-36411322102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e++ed+ +++++sw++ g+sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F  g+++ll++
  XP_010545101.1  41 FLTKTFEMVEDPGTDHIVSWNRGGTSFVVWDPHSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEAFLVGQRQLLKN 126
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+k+
  XP_010545101.1 127 IKRRKT 132
                     ****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.52E-3637130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.8E-6237130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-3937130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-204164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.0E-3241130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-2092104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMMNPYFAAT GEYSGGGGDR PPRGMVPQPM EGLNEMGPPP FLTKTFEMVE DPGTDHIVSW  60
NRGGTSFVVW DPHSFSTNLL PRYFKHNNFS SFVRQLNTYG FRKIDPDRWE FANEAFLVGQ  120
RQLLKNIKRR KTPPSSSPSL LMGEQQEPCI EVGGFGATEG REMQRLQRDR HVLIAEVVKL  180
RQQQQRTRAY LQAMEERLQG AEKKQRQMMS FLARAMQNPS FLNQLLQQRD KRRELEEAAC  240
KKRRRPIEQG HSVKAEPLEV SELEALALEM QGFGRRHDRE LDHGFWEELL SNERFEGELQ  300
IPGGDDDEDE EHVNVLADRF GYLGSSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-263913518125Heat shock factor protein 1
5d5u_B2e-263913227131Heat shock factor protein 1
5d5v_B2e-263913227131Heat shock factor protein 1
5d5v_D2e-263913227131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129LKNIKRR
2230244KRRELEEAACKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545101.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545101.10.0PREDICTED: heat stress transcription factor A-7a isoform X1
SwissprotQ9SV121e-109HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A1R3I4V31e-150A0A1R3I4V3_COCAP; Heat shock factor (HSF)-type, DNA-binding protein
STRINGXP_010545101.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-100heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]