PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545037.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 469aa    MW: 50394.9 Da    PI: 8.6761
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545037.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.2e-115175327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     + C +++rtG+C yG+rC+++H++
  XP_010545037.1 51 APDCAYYMRTGICGYGSRCRYNHPR 75
                    589********************96 PP
2zf-CCCH40.54.7e-1396120327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tGtCk+G++CkF+H++
  XP_010545037.1  96 EPPCQFYLKTGTCKFGASCKFHHPK 120
                     79*********************96 PP
3zf-CCCH36.11.1e-11143166427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C+++++tG+Ck+G +CkF+H++
  XP_010545037.1 143 KECSHYLKTGQCKFGVTCKFHHPQ 166
                     68********************97 PP
4zf-CCCH35.51.7e-11294318125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     +++++C++++rtG Ck+G +CkF+H
  XP_010545037.1 294 PGEPECQYYLRTGDCKFGLSCKFHH 318
                     5799********************* PP
5zf-CCCH35.31.9e-11341366227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +  +C f++++G+C++G++CkF H++
  XP_010545037.1 341 GVQPCTFYLQNGFCRFGSTCKFDHPM 366
                     6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1174876IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-65376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-693120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.09893121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-696121IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-1096120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-598119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23139167IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6142167IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9143166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911293321IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-5293320IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-9295318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5297322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4299321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347339367IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6339366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6341370IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9341366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-6343370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDVYGRSQAM SGAQSGQAPE WSSEGADTGL EESMWRLGLS SSETYPERPG APDCAYYMRT  60
GICGYGSRCR YNHPRDRAVV EAAVRATGEY PERVGEPPCQ FYLKTGTCKF GASCKFHHPK  120
NAGGSMSQVP LNIHGYPLRE AEKECSHYLK TGQCKFGVTC KFHHPQPAGT TTPASTPRFY  180
PSVQSPIPDQ YSGPSSSLRV ARPPLLPGSY MQGAYGPMLL TPGVVPIPGW NPYSGPVSPV  240
LSPGAQHAVG ATSLYGVTQL SSSTPSLAGA YPSLSSSTAP SVGSQKEQIF PERPGEPECQ  300
YYLRTGDCKF GLSCKFHHRR DRIPQRANCI LSPIGLPLRP GVQPCTFYLQ NGFCRFGSTC  360
KFDHPMGTLR YNPSASSLVD APVAPYPMGS LLLGALPPSS SSSELTISTS QKDAYLTGLS  420
PSSSISAGLI FSQSGPLPFP DLQLSSHTVT PPLSSSRITR QGREIRRSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545037.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
STRINGXP_010545037.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein