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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010544992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 32830.2 Da PI: 8.3066 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 78 | 126 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ + k++g XP_010544992.1 78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREAIKIRG 126 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-22 | 77 | 135 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.052 | 77 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-39 | 77 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 77 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.05E-33 | 78 | 136 | No hit | No description |
PRINTS | PR00367 | 7.7E-12 | 78 | 89 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-12 | 78 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-12 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MCGGAIISDF IIRNRGQSVS AADIWPNSFF AKINGGQFDP DPARLGESGR VSLKRSQPVS 60 GGGQEAAEKP KRQRKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDRE 120 AIKIRGKKAK VNFPNDDTHF TINHRKNGQP CHLNPPPNSN PIPNRNYHPV ADSSSTSFGF 180 GNGLNQIPVA DSCNTNPVQS GVHSDSAAEE NSGSNSACEP ANSYSPPAIN GGETKAKEEK 240 NEVQRLSEEL MAYEDYMKFY QIPYLEGQSS TATDASAQVS VVGNLWNFED AMAASPVASG 300 SA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 78 | 134 | 6 | 63 | ATERF1 |
3gcc_A | 6e-22 | 78 | 134 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 73 | KPKRQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010544992.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544992.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | A0A067K8U5 | 2e-95 | A0A067K8U5_JATCU; Uncharacterized protein | ||||
STRING | XP_010544992.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 4e-35 | ERF family protein |