PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544958.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 321aa    MW: 35261.2 Da    PI: 6.4028
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.63e-34162219259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp++v++tYeg+H+h+
  XP_010544958.1 162 EDGYRWRKYGQKAVKNSPFPRSYYRCTTATCNVKKRVERSFTDPSIVVTTYEGQHTHP 219
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381304.2E-1073321IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.804.5E-35146221IPR003657WRKY domain
SuperFamilySSF1182902.22E-29153221IPR003657WRKY domain
PROSITE profilePS5081131.674156221IPR003657WRKY domain
SMARTSM007742.5E-40161220IPR003657WRKY domain
PfamPF031061.1E-26162219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MENIGVGPSS FADFAQQSFY PLQSVWDFGD LAERNSLGFM ELLGLRQDLN PSSLFETVSP  60
QAAAEVYSPI AVPSSRAALK VEYLCSEAAV NPPATPNSSS ISSVSSEAVN EEQVKGVYEA  120
EEEEEQEQKS ATKKQSKPKT NQKKQREPRV AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF  180
PRSYYRCTTA TCNVKKRVER SFTDPSIVVT TYEGQHTHPS PLMYRPPFCT RAAGNFISSA  240
AGGGSSGLSA ESSTLSPQSQ QFVHYQQQHL SSYGGEYLNG YDHILKKTQL CSNPGGAAAG  300
LTVKDHGLLE DVVPSLMFKD N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-28151221777Probable WRKY transcription factor 4
2lex_A2e-28151221777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544958.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544958.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229006e-89WRK23_ARATH; WRKY transcription factor 23
TrEMBLD7LGL48e-94D7LGL4_ARALL; Predicted protein
STRINGXP_010544958.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-70WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]