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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010544881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 384aa MW: 43102.6 Da PI: 6.5103 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.5 | 2.4e-13 | 196 | 247 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr l+P++ + ++ + a+i A++++k L+ XP_010544881.1 196 QRMTHIAVERNRRRQMNDHLNSLRILIPPS---YVQRGDQASIIGGAIDFVKALE 247 79****************************...9*****************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.89E-11 | 194 | 250 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-15 | 194 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-12 | 195 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.193 | 195 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-10 | 196 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-9 | 201 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MEKLQGHINP SSLHRQVDVG SLEVHGFAEA QSFGLEDEEE RKVQQISAPG LQETIPLLQM 60 LQNGEPSPFL SFKEPNFLAL LSLQTLKKPW ELENNTHEVP DFHSSIHSET SSFHQNPASV 120 SCMEEFHPAI SNQELPFNPL ENLLSSANTL PSSSSPCTGN WRSKRKNSHL PPSMSRERRK 180 RKRTKPTKNI EDIENQRMTH IAVERNRRRQ MNDHLNSLRI LIPPSYVQRG DQASIIGGAI 240 DFVKALEQLL LSLEAQKRTQ KNGGEGETMD ANLASNHVRG ISSNEWCMSN EDQASSPKIE 300 ATVIQNHVNL KVQCPKKQGQ LLKAIISLED LRLTVLHLNV ACSHASVFYS FNLKMEEDCI 360 LGSADEISTA VHQIFDQIDG SKLD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 182 | KRKNSHLPPSMSRERRKRKR |
2 | 177 | 182 | RRKRKR |
3 | 178 | 185 | RKRKRTKP |
4 | 196 | 207 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010544881.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544881.1 | 0.0 | PREDICTED: transcription factor bHLH67-like isoform X1 | ||||
Swissprot | O81037 | 1e-128 | BH070_ARATH; Transcription factor bHLH70 | ||||
TrEMBL | R0H7K9 | 1e-139 | R0H7K9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010544881.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3119 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 1e-121 | bHLH family protein |
Publications ? help Back to Top | |||
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