PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544689.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 786aa    MW: 85754.5 Da    PI: 6.373
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-20110165156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rq+k+WFqNrR+++k
  XP_010544689.1 110 KKRYHRHTPQQIQELESVFKECPHPDEKQRLELSRRLSLDPRQIKFWFQNRRTQMK 165
                     688999***********************************************999 PP
2START176.21.9e-553105361205
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ela++a++elvk+a+a+ep+Wv+ss    e +n+de+ ++f++  v      +  ea+r++g+v+ ++  lve+l+d+  +W  +++    + +t
  XP_010544689.1 310 ELALSAMDELVKMAQAREPLWVRSSecgrEVLNRDEYDRTFSSC-VgpkregFVLEASREVGMVIINSLALVETLMDSE-RWADMFPcmiaRTST 402
                     57899********************9999999999999999664.35999999**************************.*************** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEE CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtw 166
                     +e issg      galqlm+aelq+lsplvp R + f+R+++q+ +g+w++vdvS+d     ++    s++  +++lpSg+l+++++ng+skvtw
  XP_010544689.1 403 TEIISSGvggtrsGALQLMQAELQLLSPLVPaRRVSFLRFCKQQAEGVWAVVDVSIDGAIRDSSaatVSGSPSCRRLPSGCLVQDMPNGYSKVTW 497
                     ********************************************************98766665566678888999******************* PP

                     EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     veh++++++++h  +r+lv+ gla+ga +wv  lqrqce
  XP_010544689.1 498 VEHAEYDESQIHHTYRPLVRCGLAFGAHRWVTSLQRQCE 536
                     **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-2195167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-2197167IPR009057Homeodomain-like
PROSITE profilePS5007117.621107167IPR001356Homeobox domain
SMARTSM003894.5E-20108171IPR001356Homeobox domain
CDDcd000861.03E-19109167No hitNo description
PfamPF000464.2E-18110165IPR001356Homeobox domain
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PROSITE profilePS5084841.094301540IPR002913START domain
SuperFamilySSF559619.34E-31305536No hitNo description
CDDcd088758.04E-116305536No hitNo description
SMARTSM002346.1E-42310537IPR002913START domain
PfamPF018527.4E-48310536IPR002913START domain
SuperFamilySSF559619.75E-21555774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MVSQAAAPGS FPTSRTATTC LLQRPVLLLP PNRGDLVPPL AKSMFSSPGL SLGLQMNVEN  60
NGAVARGSES IEVSAIRRSR EEEPESRSGS DNAEGFSGDD HDAADRPPRK KRYHRHTPQQ  120
IQELESVFKE CPHPDEKQRL ELSRRLSLDP RQIKFWFQNR RTQMKTQLER HENSLLRHEN  180
DKLRSENMSI REAMRNPICG NCGGPAVLGE VCLEEQHLRI ENARLKDELD RVCALAGKFL  240
GRPIPSVSAS HPLPDSALEL GVGSNAGFSL AANAGFEISV PGASLAPVTR PPSANAVNVT  300
GLEHRPMYLE LALSAMDELV KMAQAREPLW VRSSECGREV LNRDEYDRTF SSCVGPKREG  360
FVLEASREVG MVIINSLALV ETLMDSERWA DMFPCMIART STTEIISSGV GGTRSGALQL  420
MQAELQLLSP LVPARRVSFL RFCKQQAEGV WAVVDVSIDG AIRDSSAATV SGSPSCRRLP  480
SGCLVQDMPN GYSKVTWVEH AEYDESQIHH TYRPLVRCGL AFGAHRWVTS LQRQCEFLTI  540
LMSSSPDHSP ISSSGRKSML KLAQRMTDNF CGGVCASSAQ KWSQLNVGNI DEDVRIMTRK  600
SVDDPGEPPG IVLSAATSVW LPETAPRRLF DFLRDERLRS EWDILSNGGP MQEMAHIAKG  660
QDHSNCVSLL RVSAMNANES SMLILQETSI DPAGALVVYA PVDIPAMHVV MNGGDSAYVA  720
LLPSGFAILP DSGAGRTDGE GGSLLTVAFQ ILVNSLPTAK LTVESVDTVN NLISCTVQKI  780
RAALSC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058514.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein HDG1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A067JXS10.0A0A067JXS1_JATCU; Uncharacterized protein
STRINGXP_010544689.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]