PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544682.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 354aa    MW: 37387.5 Da    PI: 9.5628
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.25e-37751742102
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                     ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++    +   +  + ++++ ++ ++
  XP_010544682.1  75 TTKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTTNASPEPGEH 167
                     789*************************************************************9999955522..2222222222222333333 PP

             TCP  96 kskksqk 102
                     + kk++k
  XP_010544682.1 168 PAKKRRK 174
                     2222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-3080157IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14181135IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MATVQKQEIG EDEDIRAVDL SINGVGTAET SSHADHTRLA PKEEPDEDGR VKPPLGVVMP  60
LSTVQVPSMS PSPPTTKRAS TKDRHTKVEG RGRRIRMPAT CAARIFQLTR ELGHKSDGET  120
IRWLLEHAEP AIIAATGTGT VPAIAMSVNG TLKIPTTTNA SPEPGEHPAK KRRKRPSNSE  180
YIDINDAVSV SSGLAPIATT LPPPLPPASA APVSSAPTDQ QALPQGLVPV WAIPSNSVFW  240
VPHVANVAGP SNQPQILAFQ ATAAPLINIS ARPMTSSFIA AMAAPNQAVQ SSSMLSVSTI  300
AASKPSITTS VMAPISSSGI IRGSTASGSS NRTHMLRDFS LEIYDKQELQ FMTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169173KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544682.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544682.10.0PREDICTED: transcription factor TCP9
SwissprotO646471e-111TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A061DVP11e-130A0A061DVP1_THECC; TCP family transcription factor
STRINGXP_010544682.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-107TCP family protein