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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_010544657.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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| Family |
LBD |
| Protein Properties |
Length: 231aa MW: 24859.2 Da PI: 8.4859 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010544657.1 | genome | NCBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 124.4 | 5.7e-39 | 13 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+C aCk+lrrkC+++C++apyf +eq + fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+rdPvyG+v+ i++lqqq+ +l++el
XP_010544657.1 13 PCGACKFLRRKCVPGCIFAPYFDSEQgATYFAAVHKVFGASNVSKLLLQIPVHKRSDAVITISYEAHARLRDPVYGCVAQIFALQQQVVNLQTEL 107
7***********************998899***************************************************************** PP
DUF260 95 allkee 100
+ l+++
XP_010544657.1 108 SFLQAH 113
*99876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MSGGGSSSEG NGPCGACKFL RRKCVPGCIF APYFDSEQGA TYFAAVHKVF GASNVSKLLL 60
QIPVHKRSDA VITISYEAHA RLRDPVYGCV AQIFALQQQV VNLQTELSFL QAHLATLEPP 120
QLRPPPPPPP VVVPPPLTIS DLPVFSASPP TTYDLSSFFD PTALRTPSSS SSWANMQRRI 180
VDPRQQYGAV SSSSGNELQT LAHELFQRHV SPPPPPPPPA TDGSPSRSMS R
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| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
| Publications
? help Back to Top |
- Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources.
Plant Physiol., 2012. 159(3): p. 884-901
[PMID:22589469] - Lee HW, et al.
Dimerization in LBD16 and LBD18 Transcription Factors Is Critical for Lateral Root Formation.
Plant Physiol., 2017. 174(1): p. 301-311
[PMID:28336771] - Pandey SK,Kim J
Coiled-coil motif in LBD16 and LBD18 transcription factors are critical for dimerization and biological function in arabidopsis.
Plant Signal Behav, 2018. 13(1): p. e1411450
[PMID:29227192] - Pandey SK, et al.
LBD18 uses a dual mode of a positive feedback loop to regulate ARF expression and transcriptional activity in Arabidopsis.
Plant J., 2018. 95(2): p. 233-251
[PMID:29681137] - Lee HW, et al.
LBD16 and LBD18 acting downstream of ARF7 and ARF19 are involved in adventitious root formation in Arabidopsis.
BMC Plant Biol., 2019. 19(1): p. 46
[PMID:30704405]
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