PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544587.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 274aa    MW: 29634.4 Da    PI: 5.0354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544587.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1886135255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  XP_010544587.1  86 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 135
                     69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.9E-3786149IPR001471AP2/ERF domain
PROSITE profilePS5103223.15686143IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2186143IPR016177DNA-binding domain
PfamPF008479.9E-1386135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-3186144IPR001471AP2/ERF domain
PRINTSPR003672.3E-108798IPR001471AP2/ERF domain
CDDcd000182.50E-3087145No hitNo description
PRINTSPR003672.3E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEKHINIESG ALQDNTFFVT TTSFSSSATA ASSLSPSPSC SSTSSFPETC TEGNSRAKTS  60
RKAQDDNNGA KKRRKNSENG SDKHPTYRGV RMRSWGKWVS EIREPRKKSR IWLGTYPTAE  120
MAARAHDVAA LAIKGTGAFL NFPELSGELP RPASTSPKDI QAAAGKAAAA TWHDLGQNGD  180
EGSSKTEPSG GVMYAVQSSS SLVSSDTTTY ESSLISSASS TDKEGDEDTL FDLPDLFTDG  240
LTRNDAFCYY SSTWQLCAAE SVFRLEEPFL WQDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-17831441173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17074KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544587.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544587.10.0PREDICTED: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ78e-84ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLD7LBU12e-89D7LBU1_ARALL; Uncharacterized protein
STRINGXP_010544587.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-70ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]