PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544461.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 446aa    MW: 49012.6 Da    PI: 9.6968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.3e-07204226223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +CpdCg+ F++++nL+ H+ + H
  XP_010544461.1 204 SCPDCGEIFTNSENLELHQAVrH 226
                     8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-4202222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280203226IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328203231IPR007087Zinc finger, C2H2
SuperFamilySSF563993.45E-18228445No hitNo description
Gene3DG3DSA:3.90.228.106.1E-12229445IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAKAKDERKT SKAIIQKATS WSTMRSLFSF KHHHNLNPKP QPKQLLVQTQ TQKQKQKLQG  60
QMPEETVKKK CKKMKCSGSL CSNTKVMHRP ETSNSPETLK KNRPNSTDNH HHHNNNASSS  120
SSSSFSSHSS SNRSMKAPLR ELNVNGGSSL ALDPSSLKES SGGSGASFRG KPLRRFYGCY  180
ECRMVVDPVL GIIRDPVPRN TVCSCPDCGE IFTNSENLEL HQAVRHAVSE LGPEDTSKNI  240
VEIIFQSSWL KKQAPICKID RILKVRNTQS TISKFEEYRD AIKAKATKLP RKNPRCVADG  300
NELLRFHCTT VSCHLGLRSA TNLCNDSSPS CRVCAIIKTG FGDKGQGKNG ILTTATSGRA  360
HDSWDAQDSR VGSVEGERAM LVCRVIAGRV KKCGGGEGYN RNFGGDGVGE EYDSVAGDVG  420
AYSNLDELYV FDPKAILPCF VVIYSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544461.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544461.10.0PREDICTED: uncharacterized protein LOC104817077
TrEMBLA0A2P6PX121e-161A0A2P6PX12_ROSCH; Putative transcription factor C2H2 family
TrEMBLA0A498HYJ41e-161A0A498HYJ4_MALDO; Uncharacterized protein
STRINGXP_010544461.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-93C2H2-like zinc finger protein