PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544363.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 279aa    MW: 31439.2 Da    PI: 10.0796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544363.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024223245123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C++ F +   L  H+r+H
  XP_010544363.1 223 HECGICKRAFASGQALGGHMRSH 245
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.034174201IPR007087Zinc finger, C2H2
SMARTSM003550.52174196IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-7175198IPR007087Zinc finger, C2H2
SuperFamilySSF576671.49E-8175245No hitNo description
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-4214246IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11223245IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.889223246IPR007087Zinc finger, C2H2
PfamPF139122.3E-10223246IPR007087Zinc finger, C2H2
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDKRKRKLCW KRFADGRRTL GGHMVKIPIP LVKHPESASS HSSSSSDDEE DKTISAADPE  60
FSSSVSEAES FKNPTRKGSR LTRKPGCISS RRPQLKPTKQ EEQVSVKDTK RRTSQITESW  120
TEQEPASSVS DEDAATTEED VAFCLMMLSR DKTQVENDQE HESENKKRKK RDNNKCETCG  180
RIFKSYQALG GHVASHKKKK KNRTASEPVQ EQEQETQTRK RIHECGICKR AFASGQALGG  240
HMRSHSINSL RRESSTDLIN LPAPLSLSLS QNFSSHTLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165169KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544363.10.0PREDICTED: zinc finger protein ZAT1
TrEMBLA0A087HKC11e-49A0A087HKC1_ARAAL; Uncharacterized protein
STRINGXP_010544363.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.14e-41C2H2-like zinc finger protein