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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010544363.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 279aa MW: 31439.2 Da PI: 10.0796 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00024 | 223 | 245 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F + L H+r+H XP_010544363.1 223 HECGICKRAFASGQALGGHMRSH 245 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.034 | 174 | 201 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.52 | 174 | 196 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.0E-7 | 175 | 198 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.49E-8 | 175 | 245 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 176 | 196 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 214 | 246 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.11 | 223 | 245 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.889 | 223 | 246 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-10 | 223 | 246 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 225 | 245 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MDKRKRKLCW KRFADGRRTL GGHMVKIPIP LVKHPESASS HSSSSSDDEE DKTISAADPE 60 FSSSVSEAES FKNPTRKGSR LTRKPGCISS RRPQLKPTKQ EEQVSVKDTK RRTSQITESW 120 TEQEPASSVS DEDAATTEED VAFCLMMLSR DKTQVENDQE HESENKKRKK RDNNKCETCG 180 RIFKSYQALG GHVASHKKKK KNRTASEPVQ EQEQETQTRK RIHECGICKR AFASGQALGG 240 HMRSHSINSL RRESSTDLIN LPAPLSLSLS QNFSSHTLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 169 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010544363.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544363.1 | 0.0 | PREDICTED: zinc finger protein ZAT1 | ||||
TrEMBL | A0A087HKC1 | 1e-49 | A0A087HKC1_ARAAL; Uncharacterized protein | ||||
STRING | XP_010544363.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1465 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 4e-41 | C2H2-like zinc finger protein |