PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 165aa MW: 18477.7 Da PI: 10.123

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010544359.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.7	9.2e-21	57	107	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrdp++ng +r++lg++ tae+Aa a+++a+ +++g+ XP_010544359.1 57 YRGVRRRP-WGKYAAEIRDPKKNG--ARIWLGTYETAEDAAMAYDRAAFEMRGA 107 9*****.*******9998..************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.2E-37	56	120	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.08E-24	56	115	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.6E-33	56	115	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.065	56	114	IPR001471	AP2/ERF domain
Pfam	PF00847	2.2E-14	57	106	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.7E-11	57	68	IPR001471	AP2/ERF domain
CDD	cd00018	3.22E-28	57	116	No hit	No description
PRINTS	PR00367	5.7E-11	80	96	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MEGELACESS SSSSSKVLES IRRYLLEEDE SEEPRSSTEE EGNRKREPPS PVRGGSYRGV 60 RRRPWGKYAA EIRDPKKNGA RIWLGTYETA EDAAMAYDRA AFEMRGAKAK LNFPHLIGTD 120 GVEPARVSNR RRRLPENADP AGKRRSNTSI INIAARLPSL GFRIV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-31	53	114	2	63	ATERF1
3gcc_A	2e-31	53	114	2	63	ATERF1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010544359.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002388	3e-32	AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence.
GenBank	AF325089	3e-32	AF325089.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds.
GenBank	AF370540	3e-32	AF370540.1 Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds.
GenBank	AY072471	3e-32	AY072471.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds.
GenBank	AY088387	3e-32	AY088387.1 Arabidopsis thaliana clone 6397 mRNA, complete sequence.
GenBank	CP002685	3e-32	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010544359.1	1e-115	PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBL	A0A1J3G8C6	1e-55	A0A1J3G8C6_NOCCA; Ethylene-responsive transcription factor 13
STRING	XP_010544359.1	1e-115	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	6e-24	ethylene-responsive element binding factor 13