PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544330.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 594aa    MW: 65731.6 Da    PI: 8.1797
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-093523842254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+  +++ LAk++gLt +qV++WF N R +
  XP_010544330.1 352 HPYPKDMDKQMLAKQTGLTRSQVSNWFINARVR 384
                     89*****************************88 PP
2BELL103.31.8e-33214284272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     rqelq+kkakL+s++eeV++rY +y++q+q+++ssFe++ g  +ak+YtslAl +iS++Fr Lkda+  qi
  XP_010544330.1 214 RQELQMKKAKLVSMVEEVEQRYMHYRDQMQAIVSSFEQAGGFTAAKSYTSLALPTISKQFRVLKDAVRTQI 284
                     89******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-41139282IPR006563POX domain
PfamPF075264.6E-37154280IPR006563POX domain
PROSITE profilePS5007112.406325388IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-29327401IPR009057Homeodomain-like
CDDcd000867.00E-13328389No hitNo description
SMARTSM003891.6E-10328392IPR001356Homeobox domain
SuperFamilySSF466891.63E-17329396IPR009057Homeodomain-like
PfamPF059201.1E-18345384IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MAAFFHEPSQ AREDSSSSSE FALQHHQHSL RLMNALDHAP PSLSVDVSTC TPHHFYYNGN  60
SCFGSPVDPD PDPIRDVIKP DPGGSQGFEL LPRLPLPAVS PGNGKKLSLG LSSRQTQTRT  120
RTTIGHVEQG NSAVSTVTNG VVFSATGNGF DPMYLKAAHE LLNEIVSVGN AKNSDCDGSK  180
GKLTVKTEFS GDGFAGSGYR GGIPIGGELT ATNRQELQMK KAKLVSMVEE VEQRYMHYRD  240
QMQAIVSSFE QAGGFTAAKS YTSLALPTIS KQFRVLKDAV RTQIKIISKC LGEEYTKKTV  300
REGCGFVDQT QQLRHLGIMQ KHHHANAWRP QRGLPERAVS ILRAWLYEHF LHPYPKDMDK  360
QMLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYSEEMKV QANAKNDTTN EEDNDDLELG  420
VSSSKQPRNH DSSDQSIPGN SNLKNNKNVA GQCSSLNVSS STLAAASHHQ GGILSRPKKL  480
RTMENDFDVM QNSSIVSYET ERKQQMDHPA RESGNLIHFN GGFGNYRQAM YGKAVSLSLG  540
PPHSRDQTFN DVFETSHQIE FSGVSPLSTY QNIDIPGKRR FVTNAAPLLP DFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16334391158Homeobox protein Meis1
4xrs_B2e-16334391158Homeobox protein Meis1
5bng_A2e-16334392159Homeobox protein Meis2
5bng_B2e-16334392159Homeobox protein Meis2
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544329.10.0PREDICTED: BEL1-like homeodomain protein 5
RefseqXP_010544330.10.0PREDICTED: BEL1-like homeodomain protein 5
STRINGXP_010544329.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.11e-116BEL1-like homeodomain 5