PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010544248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 26421.1 Da PI: 6.9571 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 2e-11 | 73 | 120 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RRdr+N++f eL ++l + + K +K +iL Av+ +++L XP_010544248.1 73 SKACREKQRRDRLNDKFMELSSILEHG---RPSKTDKPTILMDAVRMVNEL 120 5678**********************8...789*************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.913 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-9 | 73 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.26E-8 | 73 | 125 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.8E-12 | 74 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-8 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-13 | 75 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 2.1E-4 | 134 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVFPENPNWF CDYNLVDGDF SVHNSVVPWP IELISGSDSL SAEIDGFLGD LDGLNEPASR 60 KRLKSESCTG SNSKACREKQ RRDRLNDKFM ELSSILEHGR PSKTDKPTIL MDAVRMVNEL 120 RVEAQKFKEL NSSLQEKIKE LKEEKHELRD EKQKLKTEKE KLEQQLKMVK AHHHHQPQPI 180 FLPNPQAVPQ VQAPGNKLVQ FPSYPGFAMW QFMPPASVDT SQDHVLRPPV A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010544248.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544248.1 | 1e-172 | PREDICTED: transcription factor bHLH115 | ||||
Swissprot | Q9C682 | 1e-115 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | E4MY09 | 1e-113 | E4MY09_EUTHA; mRNA, clone: RTFL01-30-I24 | ||||
TrEMBL | V4JXZ4 | 1e-113 | V4JXZ4_EUTSA; Uncharacterized protein | ||||
STRING | XP_010544248.1 | 1e-171 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 4e-85 | bHLH family protein |
Publications ? help Back to Top | |||
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