PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544243.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 285aa    MW: 29492.6 Da    PI: 7.2053
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.5e-19219254235
            GATA   2 s..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     +  nC+t++Tp+WR+gp g+k+LCnaCG++yrk+++
  XP_010544243.1 219 TnfNCNTSDTPMWRKGPLGPKSLCNACGIKYRKEEE 254
                     5559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.9E-13212265IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-12216259No hitNo description
PfamPF003201.3E-16218254IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.4E-14221257IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.90E-11221251No hitNo description
PROSITE profilePS5011411.49222256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAITKVFVGM EDLDLTLKLG LPMSNQIVDS DKGPTIGTGS NGDATTKVDI NLMVSDYIMQ  60
KFSGAGKHFT GGSSGSGEYF PGGSSGGYFA GGSSGSGGYF PGGFSGGYFS GGCFGGHFAG  120
GSSGSGEYFP GGCSGGYFSG GSSGSGIYLP DGISGDMNPR RDPPAPAAVP VIGNEFVLID  180
VPERRAQRER ALANANANAN ANANAGYNIK ASSLVKRCTN FNCNTSDTPM WRKGPLGPKS  240
LCNACGIKYR KEEERRKARA EAANNNREAD EPGTQNNPIY INFAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544243.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544243.10.0PREDICTED: glycine, alanine and asparagine-rich protein isoform X1
STRINGXP_010544243.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.14e-19GATA transcription factor 29