PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544214.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 299aa    MW: 32749.3 Da    PI: 8.359
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544214.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.23.6e-16222258135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kg+
  XP_010544214.1 222 CRHCGINEksTPMMRRGPEGPRTLCNACGLMWANKGT 258
                     ****998889************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.8E-1277112IPR010399Tify domain
PROSITE profilePS5132014.48577112IPR010399Tify domain
PfamPF062001.4E-1280111IPR010399Tify domain
PfamPF062032.1E-15146188IPR010402CCT domain
PROSITE profilePS5101712.987146188IPR010402CCT domain
SMARTSM004015.8E-13216269IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.447216276IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.85E-13218280No hitNo description
Gene3DG3DSA:3.30.50.102.3E-15220263IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.70E-14221264No hitNo description
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
PfamPF003204.8E-14222258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNGLHGDDAQ MHIGEAQDPM HVQYEHHGLH HINNGNRMVE MHADGGTTGR VNGGVETDIP  60
SHTGNFSDNR GEVVDRGSEN GDQLTLSFQG QVYVFDSVSA EKVQAVLLLL GGRELPQAVS  120
PAVGPTTPQN NRGFSGIPQR FSVPQRLASL VRFREKRKGR NFDKKIRYTV RKEVALRMQR  180
NKGQFTSAKS NNDDSASAGS NWESNPTWGI EGTESQAQEI SCRHCGINEK STPMMRRGPE  240
GPRTLCNACG LMWANKGTLR DLSKATPAAQ NLPVNRTNQD ANVEADQMMR VTGNISNSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544214.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544212.10.0PREDICTED: GATA transcription factor 28-like
RefseqXP_010544213.10.0PREDICTED: GATA transcription factor 28-like
RefseqXP_010544214.10.0PREDICTED: GATA transcription factor 28-like
SwissprotQ8H1G01e-164GAT28_ARATH; GATA transcription factor 28
TrEMBLR0IMP11e-165R0IMP1_9BRAS; Uncharacterized protein
STRINGXP_010544212.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-156ZIM-LIKE 2