PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 306aa MW: 33413.8 Da PI: 5.1496

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010544197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65	1.6e-20	137	186	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g XP_010544197.1 137 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 186 59****9.******955...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.41E-34	136	194	No hit	No description
SMART	SM00380	9.0E-37	137	200	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-23	137	194	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.906	137	194	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-31	137	194	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-14	138	186	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-11	138	149	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-11	160	176	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009415	Biological Process	response to water
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEALQPFYRS ASAFAPPPAA PSDSAFASAS ASNDPPVSYS SSSSYYPPCN YQTEPGFYPD 60 LSSGSMTHIF SNGSDLHQPG YQIPPQTHFD YTSDFTYSHP EHSNSMLNFI DPSSVMSNQP 120 GYVPVPVPEP GAKPAKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EEAALAYDRA 180 AYKLRGDSAR LNFRPRPAAD YSEYAALHAS VDAKLEAILS EPKNQPGNSE SQPTRKRGSS 240 TSSAVGECSP AVVPPRMNSG SGESDGSGES SPVSELMVAE PPMPWNENFM LGRCPSYEID 300 WDSILS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-19	136	196	1	62	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	2e-19	135	196	3	65	ATERF1
3gcc_A	2e-19	135	196	3	65	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00182	DAP	Transfer from AT1G36060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010544197.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010544197.2	0.0	PREDICTED: ethylene-responsive transcription factor ERF055
Swissprot	Q9SKW5	2e-94	ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBL	A0A178W0X8	2e-91	A0A178W0X8_ARATH; Uncharacterized protein
STRING	XP_010544197.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15124	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G36060.1	3e-69	ERF family protein

Publications ? help Back to Top
Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255]