PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543481.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 454aa    MW: 50853.6 Da    PI: 6.1256
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix667.9e-211622282586
        trihelix  25 k....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                          +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++++++
  XP_010543481.1 162 GggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLESMD 228
                     044559*********************************************559********99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-17163253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MESNGLSSVM FSGFSPGMLS LEMPQNPQNP QNPIQFQHPQ MVSYAGNNGG GGDQQHHNHH  60
QTQPPMKTPQ DPYYPYASKH KQLSPLSDED DPGSGSVSGY NPEDSTGADG KRKFSPWQRM  120
KWTDTIFFGG GIFLGDEAGS SETADAAKKK PSSSAASTSS GGGGLLQKKG KWKSVSRAMM  180
EKGFYVSPQQ CEDKFNDLNK RYKRVNDILG KGTACRVVEN QSLLESMDLP PKLKEEAKKL  240
LNSKHLFFRE MCAYHNSCGH LTHTNANAIA AADQPQTQTQ SHPQPQQSCF HSAAAGDSSK  300
MTRIAENGEE EEEESDTAED SDTEDDSDEE GEEEEVVAGK RQRKMSETGA VRGLMEEVGR  360
VAMDMAKGAR EKKEWMKKKM VELEERRVGF EWEALEMEKQ SLKWMRFKSK KEREMEKARL  420
DNQRRRLENE RMLLLLRRKE MEFDTSASAS ASVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543481.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543481.10.0PREDICTED: trihelix transcription factor GTL1 isoform X3
TrEMBLA0A384KQJ01e-155A0A384KQJ0_ARATH; Uncharacterized protein
TrEMBLQ8RWY51e-155Q8RWY5_ARATH; Sequence-specific DNA binding transcription factor
STRINGXP_010543481.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.15e-95sequence-specific DNA binding transcription factors