PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543469.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 292aa    MW: 31930.8 Da    PI: 4.4489
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015265288123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C++sF++   L++H +  H
  XP_010543469.1 265 HQCSSCKRSFTSEVGLQSHTKAkH 288
                     79*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.097265292IPR007087Zinc finger, C2H2
PROSITE patternPS000280267288IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEFWGVECKP GACVSVEPGS DMIVHISQAA LGESKNKGDE PIYLYLVVDD VKYTIGTLFQ  60
GKCPQLSSEI LLEKGFELSH SWKHGSVYFT GYKVDAREDD EEEEGSDDEL PVVSEKEKPK  120
PDAVEVKPEV KKTDPAKSGT KQVNFKVPNE EDNAMQDDDD SDEDSDDDMS SSEDSSDDED  180
KKAIAGGDGD EDSDGDETSA DETPKKTEQQ SKKRPADVPK TPAPAYSEKK AKFATPQKTE  240
EGGKKGYVHE ATPHPAKQKQ KTANHQCSSC KRSFTSEVGL QSHTKAKHAP PA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543469.10.0PREDICTED: histone deacetylase HDT3 isoform X1
TrEMBLR0GWD36e-69R0GWD3_9BRAS; Uncharacterized protein
STRINGXP_010543469.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-56histone deacetylase 2C