PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010542601.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 241aa MW: 26484.6 Da PI: 4.7629

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.7	4.7e-39	47	147	1	100
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C++d Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++++da++s+vyeA+ar+rdPvyG++g i +lq+q+ +l+a++ XP_010542601.1 47 PCAACKILRRRCVADkCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELPESQKTDAVNSMVYEARARIRDPVYGSAGSIYHLQRQVIELRAQI 141 7*********9777***************************************************************************** PP DUF260 95 allkee 100 a+++ e XP_010542601.1 142 AEAQVE 147 998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.923	46	148	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-38	47	145	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MLRTEISGGT CTASTSVAAS AAVTAASSPS PQSQPQTQTQ TQVVASPCAA CKILRRRCVA 60 DKCVLAPYFP PTEPTKFTIA HRVFGASNII KFLQELPESQ KTDAVNSMVY EARARIRDPV 120 YGSAGSIYHL QRQVIELRAQ IAEAQVEIMN MQHQRSNLLA LLVCKTDRPN TASPDQQQGQ 180 NNLSNLEPSS FESGDELMSS SPRDDEIDDL GFLEDYNSNN SMDDINTTSS MPWWDHPLWS 240 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-37	45	150	9	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-37	45	150	9	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542601.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542601.1	0.0	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9SK08	3e-87	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A291LQZ0	1e-86	A0A291LQZ0_BRARR; Transcription factor LBD11
TrEMBL	A0A397ZLR9	1e-86	A0A397ZLR9_BRACM; Uncharacterized protein
STRING	XP_010542601.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	6e-83	LOB domain-containing protein 11