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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010542039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | CO-like | ||||||||
Protein Properties | Length: 391aa MW: 42778.9 Da PI: 6.4272 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18 | 6e-06 | 23 | 63 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e + +C+++ lC +C + H+ H++ XP_010542039.1 23 ACDFCGEDKPVVYCRSDAASLCLSCDRHVHSAnslsrrHSR 63 6******99*********************55667777765 PP | |||||||
2 | zf-B_box | 18.8 | 3.3e-06 | 65 | 111 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..........Htvvp 41 C+++++++++ C + + lC+ C l+ H g H++++ XP_010542039.1 65 LLCDRCSSQPASVRCVEEKASLCHRCDLSCH-GasfsasassgHKRQT 111 57***************************99.5577777777787765 PP | |||||||
3 | CCT | 58.3 | 2.6e-20 | 337 | 380 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RY+eK+ktRkFeK++rY+sRK++A+ R RvKGrF k+ XP_010542039.1 337 RIDAVMRYREKKKTRKFEKRVRYASRKERADVRRRVKGRFIKAG 380 6679************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.9E-11 | 19 | 66 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.428 | 19 | 66 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.56E-7 | 24 | 66 | No hit | No description |
PROSITE profile | PS50119 | 9.2 | 62 | 112 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.71E-4 | 66 | 112 | No hit | No description |
SMART | SM00336 | 0.3 | 67 | 112 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.0E-15 | 337 | 379 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.2 | 337 | 379 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MFLLVIADLT HSLVRRFQKM GHACDFCGED KPVVYCRSDA ASLCLSCDRH VHSANSLSRR 60 HSRTLLCDRC SSQPASVRCV EEKASLCHRC DLSCHGASFS ASASSGHKRQ TISSYSGCPS 120 SAELTSIWSS VWTVPALAEG STLEKPLVMM RSTEKNSALH SQCSSIPETS VLSDNLDLLI 180 GTDASANLPH PGIDDLGLSR DCVYEDLNLG ELDFALENFD SLFGEALNDS DTILGEGDLS 240 ATNPNGQDIF AAEEVSVRSA NSNQFSCNNM ATADSVLSNK TEPAICFTSR QAHSSLSFSG 300 ISADTNSTLD NQDCGASPAM ILTGEPLFTE GLLQKSRIDA VMRYREKKKT RKFEKRVRYA 360 SRKERADVRR RVKGRFIKAG EAYDYDPKER P |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010542039.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010542039.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-113 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A067JGL6 | 1e-124 | A0A067JGL6_JATCU; Uncharacterized protein | ||||
STRING | XP_010542039.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-101 | CONSTANS-like 9 |