PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 337aa MW: 36742.7 Da PI: 5.9179

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010541409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.8	1.4e-29	154	206	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl XP_010541409.1 154 TRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 206 79****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.258	150	209	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-19	150	210	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-29	152	211	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	154	206	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-8	156	205	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGEEVKMTEY EFPDDGDENE DSSGDEDRVL EWEMGLPRCE DLTPLSQPLV PPELALAFSV 60 SPERSRTIQD VNRVSQTMLS ALCYGSTGAR ASSSNNNSNS FKTTIAPEEE DQVGSSCVGS 120 DPKKQKKSDC VGGATAEEAD SGTEEPSART LKRTRLVWTP QLHKRFVDVV AHLGIKNAVP 180 KTIMQLMNVE GLTRENVASH LQKYRLYLKR MQGLTTEDPS SSDHLFSSTP VPLQSFHGGG 240 GGLQANGAAG QAGSSIPVMY GAPPQVMPMP VYGHMGMQEY HHHHQLHHNH GHDHYHHGTG 300 GPGVFESNTY MMQQKDWSGN KYGSMASYPS VGSGGER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	4e-34	153	209	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:21236673, ECO:0000269\|PubMed:21753751, ECO:0000269\|PubMed:22311777}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00014	PBM	Transfer from AT3G46640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010541409.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:17132630, ECO:0000269\|PubMed:21753751}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010541409.1	0.0	PREDICTED: transcription factor LUX-like
Refseq	XP_010541410.1	0.0	PREDICTED: transcription factor LUX-like
Swissprot	Q9SNB4	1e-130	PCL1_ARATH; Transcription factor LUX
TrEMBL	A0A1J3E7X7	1e-129	A0A1J3E7X7_NOCCA; Transcription factor LUX
STRING	XP_010541409.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4055	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.2	1e-113	G2-like family protein

Publications ? help Back to Top
Higham CF,Husmeier D A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana. BMC Bioinformatics, 2013. 14 Suppl 10: p. S3 [PMID:24267177]