PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541404.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 604aa    MW: 68979.4 Da    PI: 6.2546
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.33.2e-1212296002374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL++cA+av+s d++ a++ L++++ +++ +g+ +qRla++f+e+L+ar+a+ +++ ++  lp+ +ts   +++ l+a+k+f++++P+ k+s+
  XP_010541404.1 229 RSLLMQCAQAVASFDHRTATEKLKEIRSHSARNGNGTQRLAFHFAEGLQARIAGtQSPPVFYPLPCDRTS---MVDILNAYKVFVQACPVNKMSY 320
                     789***************************************************8888999999999998...********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +aN+aI + +++++r+HiiDf+i +G+QWp+L+qaL++Rp+gpp lRiTg++ p++g   +e++eetg rL++f+++++vpfe+n+ +ak++e+
  XP_010541404.1 321 YVANKAIFDLASKASRLHIIDFGILYGFQWPCLIQALSNRPGGPPLLRITGIELPQPGfrPSERVEETGGRLKRFCDRFNVPFEYNF-IAKKWET 414
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++leeL+++p+E+++Vn+ ++l +++de+vs++ +rd vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+lfd++ea+  +e+e+r+
  XP_010541404.1 415 ISLEELEIHPEETTVVNCLYRLRYTPDETVSMNPPRDMVLKLFRDINPNLFVFAEVNGMYNSPFFVTRFREALFHFSSLFDMFEATTRAEDEHRT 509
                     **************************************************************************************999****** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E+el+ r++vnv+a eg er+ r et+++W+ r ++aGF+p++l+++++k+ak ++rk + + + ++++s++l++gWk+r L+++S+W+
  XP_010541404.1 510 LLEKELFVRDAVNVIASEGVERVDRPETYKQWQVRTTRAGFRPIKLNKEITKEAKEMVRKGYHRDFVIDDDSHWLFQGWKGRVLYALSCWK 600
                     **************************************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.813202580IPR005202Transcription factor GRAS
PfamPF035141.1E-118229600IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDALLEVSFD GFRFENGSGT RCKPRNPQDS IRNSFVSLPR PEHENPPSGD SPACSDDFAV  60
LKYINDMLME EDLEGRSCVS QDSLALQAAE RSFYEVLHDQ SSLSGQNSND QSEDLTRNLS  120
TTTGSSSHRP ASDFTGSPEN TDSESALFGE SQRRYRPRDD DDTLESGRTK KQPAIWFDTD  180
LPEKFEDLLL ICTGHDQEAS NPSHHNRSGR AKGSSNRSRT RNPEPVDIRS LLMQCAQAVA  240
SFDHRTATEK LKEIRSHSAR NGNGTQRLAF HFAEGLQARI AGTQSPPVFY PLPCDRTSMV  300
DILNAYKVFV QACPVNKMSY YVANKAIFDL ASKASRLHII DFGILYGFQW PCLIQALSNR  360
PGGPPLLRIT GIELPQPGFR PSERVEETGG RLKRFCDRFN VPFEYNFIAK KWETISLEEL  420
EIHPEETTVV NCLYRLRYTP DETVSMNPPR DMVLKLFRDI NPNLFVFAEV NGMYNSPFFV  480
TRFREALFHF SSLFDMFEAT TRAEDEHRTL LEKELFVRDA VNVIASEGVE RVDRPETYKQ  540
WQVRTTRAGF RPIKLNKEIT KEAKEMVRKG YHRDFVIDDD SHWLFQGWKG RVLYALSCWK  600
PAEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4823460125380Protein SCARECROW
5b3h_A5e-4823460124379Protein SCARECROW
5b3h_D5e-4823460124379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541404.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLE4MW140.0E4MW14_EUTHA; mRNA, clone: RTFL01-05-F16
TrEMBLV4MXT70.0V4MXT7_EUTSA; Uncharacterized protein
STRINGXP_010541404.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]