PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010541340.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 496aa MW: 54771.4 Da PI: 9.3516

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010541340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_010541340.1 67 FVCEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	66	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.04E-6	66	89	No hit	No description
Pfam	PF12171	7.9E-5	67	89	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	67	89	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	67	89	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2
SMART	SM00355	91	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.8E-4	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.04E-6	139	164	No hit	No description
SMART	SM00355	160	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MMMPDDHRHL SFPNFVHQQE PINPNPNPNP PTSTNPSKKR RNLPGTPDPD AEVIALSPNS 60 LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN KEQVKKKVYI CPEKSCVHHD 120 PARALGDLTG IKKHYSRKHG EKKWKCEKCS KKYAVMSDWK AHCKICGTRE YRCDCGILFS 180 RKDSFITHRA FCDALAEEST RFTWVPPSAS QNATPPQLDH HTLMGPCLNL SRNTNVFSGQ 240 NCTSSCLPDQ ISPLMNVFGL SSSSSSSSSP SGTSDSLHTL WQLQGQFSHQ WPLDGNTNNV 300 FQRGMAKNQE GEIKKGSNIS GSSRSLNQTD PSLASLFTPN NNDSDNNNIC RSDPYMSATA 360 LLQKAAQMGS TRSNSNGSTT ALGLMTSTLF SNMHQNSNFP KKQTDPTSKS SQGSPGNMDK 420 GSLPGAREGG SSAREVVDEA GGLTRDFLGV GRHEQDRLQH HLYPSNRPLM LKHDRPDLAP 480 ATVGSAAMDM GSTLLK

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MMMPDDHRHL SFPNFVHQQE PINPNPNPNP PTSTNPSKKR RNLPGTPDPD AEVIALSPNS  60
LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN KEQVKKKVYI CPEKSCVHHD  120
PARALGDLTG IKKHYSRKHG EKKWKCEKCS KKYAVMSDWK AHCKICGTRE YRCDCGILFS  180
RKDSFITHRA FCDALAEEST RFTWVPPSAS QNATPPQLDH HTLMGPCLNL SRNTNVFSGQ  240
NCTSSCLPDQ ISPLMNVFGL SSSSSSSSSP SGTSDSLHTL WQLQGQFSHQ WPLDGNTNNV  300
FQRGMAKNQE GEIKKGSNIS GSSRSLNQTD PSLASLFTPN NNDSDNNNIC RSDPYMSATA  360
LLQKAAQMGS TRSNSNGSTT ALGLMTSTLF SNMHQNSNFP KKQTDPTSKS SQGSPGNMDK  420
GSLPGAREGG SSAREVVDEA GGLTRDFLGV GRHEQDRLQH HLYPSNRPLM LKHDRPDLAP  480
ATVGSAAMDM GSTLLK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-33	140	203	3	66	Zinc finger protein JACKDAW
5b3h_F	5e-33	140	203	3	66	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010541340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010541340.1	0.0	PREDICTED: protein indeterminate-domain 9-like
Swissprot	Q944L3	1e-144	IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBL	A0A0D3A8N0	1e-168	A0A0D3A8N0_BRAOL; Uncharacterized protein
STRING	XP_010541340.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-132	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]